DisGeNET - a database of gene-disease associations

List of associated variants

Tuberculosis, Pulmonary, C0041327

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs352140	TLR9	0.630	0.680	3	52222681	synonymous variant	C/A;G;T	snv	2.0E-05; 0.49		42
rs763059810	CXCR4	0.623	0.600	2	136115750	missense variant	T/C	snv	4.0E-06		41
rs3804099	TLR2	0.627	0.680	4	153703504	synonymous variant	T/C	snv	0.40	0.48	40
rs3804100	TLR2	0.633	0.720	4	153704257	synonymous variant	T/C	snv	9.0E-02	6.7E-02	36
rs187084	TLR9	0.641	0.480	3	52227015	intron variant	A/G	snv		0.38	36
rs8050136	FTO	0.716	0.560	16	53782363	intron variant	C/A	snv		0.40	32
rs17235409	SLC11A1	0.653	0.600	2	218395009	missense variant	G/A;C	snv	4.9E-02; 4.1E-06		31
rs121917864	TLR2	0.645	0.520	4	153704936	missense variant	C/T	snv	8.8E-05	9.8E-05	31
rs5743836	TLR9	0.658	0.440	3	52226766	intron variant	A/G	snv		0.20	31
rs1800450	MBL2	0.662	0.640	10	52771475	missense variant	C/T	snv	0.14	0.11	26
rs1041981	LOC100287329 ; LTA	0.667	0.520	6	31573007	missense variant	C/A	snv	0.35	0.38	25
rs5743618	TLR1	0.677	0.360	4	38797027	missense variant	C/A	snv	0.53	0.51	25
rs3135932	IL10RA	0.677	0.480	11	117993348	missense variant	A/G	snv	0.13	0.11	23
rs2069762	IL2	0.672	0.560	4	122456825	upstream gene variant	A/C	snv		0.24	23
rs8177374	TIRAP	0.672	0.520	11	126292948	missense variant	C/T	snv	0.12	0.11	22
rs8193036	IL17A	0.689	0.600	6	52185695	upstream gene variant	C/T	snv		0.72	21
rs1718119	LOC105370032 ; P2RX7	0.689	0.520	12	121177300	missense variant	G/A;T	snv	0.35; 4.0E-06		21
rs5743810	TLR6 ; TLR1	0.689	0.360	4	38828729	missense variant	A/G	snv	0.73	0.72	21
rs12212067	FOXO3	0.716	0.320	6	108659993	intron variant	T/G	snv		0.14	20
rs2069705	IFNG-AS1 ; IFNG	0.695	0.440	12	68161231	intron variant	G/A;C	snv			19
rs2069837	IL6-AS1 ; IL6	0.724	0.520	7	22728408	intron variant	A/C;G	snv			18
rs352139	TLR9	0.732	0.320	3	52224356	intron variant	T/C	snv	0.51	0.54	18
rs2229094	LOC100287329 ; LTA	0.776	0.320	6	31572779	missense variant	T/C	snv	0.27	0.27	17
rs7096206	MBL2	0.708	0.480	10	52771925	upstream gene variant	G/A;C;T	snv			17
rs4804803	CD209	0.732	0.360	19	7747847	upstream gene variant	A/G	snv		0.26	15