DisGeNET - a database of gene-disease associations

List of shared variants

Low density lipoprotein cholesterol measurement, C0202117

Disease: Alzheimer's Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800562	LOC108783645 ; HFE	0.435	0.880	6	26092913	missense variant	G/A	snv	3.3E-02	3.8E-02	262
rs429358	APOE	0.590	0.600	19	44908684	missense variant	T/C	snv	0.14	0.16	66
rs7412	APOE	0.641	0.640	19	44908822	missense variant	C/T	snv	6.2E-02	7.9E-02	47
rs2075650	TOMM40	0.662	0.360	19	44892362	intron variant	A/G	snv	0.13	0.13	45
rs4420638	APOC1	0.708	0.520	19	44919689	downstream gene variant	A/G	snv		0.18	43
rs405509	APOE	0.667	0.480	19	44905579	upstream gene variant	T/G	snv		0.58	30
rs646776	CELSR2	0.752	0.240	1	109275908	downstream gene variant	C/T	snv		0.74	25
rs4803750	BCL3	0.807	0.240	19	44744370	upstream gene variant	A/G	snv		7.7E-02	22
rs2303790	CETP	0.724	0.280	16	56983380	missense variant	A/G	snv	2.6E-03	6.5E-04	19
rs6857	NECTIN2	0.790	0.240	19	44888997	3 prime UTR variant	C/T	snv		0.13	16
rs688	LDLR	0.742	0.400	19	11116926	synonymous variant	C/T	snv	0.39	0.34	16
rs157580	TOMM40	0.882	0.160	19	44892009	intron variant	G/A	snv		0.69	14
rs3846662	HMGCR	0.763	0.280	5	75355259	non coding transcript exon variant	A/G	snv	0.50	0.58	12
rs769449	APOE	0.882	0.120	19	44906745	non coding transcript exon variant	G/A	snv		8.4E-02	11
rs6859	NECTIN2	0.827	0.120	19	44878777	3 prime UTR variant	A/G	snv		0.58	10
rs2740488	ABCA1	0.827	0.120	9	104899461	intron variant	A/C	snv		0.29	9
rs2678379	APOB	1.000	0.080	2	21003688	intron variant	A/G	snv		0.76	8
rs5930	MIR6886 ; LDLR	0.827	0.200	19	11113589	synonymous variant	A/G	snv	0.63	0.66	8
rs10402271		1.000	0.080	19	44825957	downstream gene variant	T/G	snv		0.28	7
rs1531517		1.000	0.080	19	44738916	intergenic variant	G/A	snv		0.11	7
rs1160985	TOMM40	1.000	0.080	19	44900155	intron variant	C/T	snv		0.52	6
rs283813	NECTIN2	1.000	0.080	19	44885917	intron variant	T/A	snv	0.11	0.16	6
rs2927438		0.925	0.080	19	44738850	intergenic variant	G/A	snv		0.20	6
rs2965101		1.000	0.080	19	44734556	intergenic variant	T/C	snv		0.34	6
rs519113	NECTIN2	1.000	0.080	19	44873027	intron variant	C/G;T	snv			6