Disease: Serum HDL cholesterol measurement
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs964184
ZPR1
0.716 0.440 11 116778201 3 prime UTR variant G/C snv 0.82 47
rs2075650
TOMM40
0.662 0.360 19 44892362 intron variant A/G snv 0.13 0.13 45
rs4420638
APOC1
0.708 0.520 19 44919689 downstream gene variant A/G snv 0.18 43
rs268
LPL
0.637 0.480 8 19956018 missense variant A/G snv 1.3E-02 1.3E-02 41
rs5882
CETP
0.649 0.400 16 56982180 missense variant G/A;C snv 0.62 35
rs174547
FADS2 ; FADS1
0.742 0.240 11 61803311 intron variant T/C snv 0.28 33
rs662799
APOA5
0.689 0.480 11 116792991 upstream gene variant G/A snv 0.90 33
rs3764261 0.732 0.280 16 56959412 upstream gene variant C/A snv 0.31 26
rs1535
FADS2
0.752 0.240 11 61830500 intron variant A/G snv 0.31 24
rs629301
CELSR2
0.851 0.120 1 109275684 3 prime UTR variant G/T snv 0.74 22
rs247617 0.827 0.160 16 56956804 regulatory region variant C/A snv 0.29 20
rs261332
ALDH1A2 ; LIPC-AS1 ; LIPC
0.851 0.120 15 58435126 non coding transcript exon variant A/G snv 0.80 20
rs174535
MYRF ; TMEM258
0.776 0.280 11 61783884 missense variant T/A;C;G snv 0.38 0.32 19
rs2266788
APOA5 ; ZPR1
0.763 0.440 11 116789970 3 prime UTR variant G/A snv 0.93 19
rs328
LPL
0.732 0.440 8 19962213 stop gained C/G snv 9.2E-02 9.0E-02 19
rs102275
TMEM258
0.827 0.320 11 61790331 non coding transcript exon variant T/C snv 0.47 18
rs1121980
FTO
0.807 0.240 16 53775335 intron variant G/A;C snv 18
rs1800775
CETP
0.790 0.240 16 56961324 upstream gene variant C/A;G snv 0.51; 5.7E-06 18
rs7120118
NR1H3
0.716 0.360 11 47264739 intron variant T/C snv 0.38 18
rs765547 0.827 0.160 8 20008763 intergenic variant G/A;C;T snv 18
rs174546
FADS1 ; FADS2
0.807 0.200 11 61802358 3 prime UTR variant C/T snv 0.28 17
rs174548
FADS2 ; FADS1
0.851 0.160 11 61803876 5 prime UTR variant C/G;T snv 17
rs651821
APOA5
0.851 0.360 11 116791863 5 prime UTR variant C/T snv 0.88 0.89 17
rs17321515 0.776 0.200 8 125474167 intron variant A/G snv 0.49 16
rs1800588
ALDH1A2 ; LIPC
0.790 0.200 15 58431476 intron variant C/G;T snv 0.30 16