Disease: Rheumatoid Arthritis
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs9770242
NAMPT
0.851 0.240 7 106285885 5 prime UTR variant C/A snv 0.79 5
rs11568821
LOC105373977 ; PDCD1
0.827 0.200 2 241851760 intron variant C/G;T snv 10
rs17281995
CD86
0.763 0.360 3 122120794 3 prime UTR variant G/A;C snv 11
rs1129055
CD86
0.724 0.400 3 122119472 missense variant G/A snv 0.30 0.25 15
rs1360485
HMGB1
0.742 0.320 13 30457747 3 prime UTR variant C/T snv 0.58 16
rs8177374
TIRAP
0.672 0.520 11 126292948 missense variant C/T snv 0.12 0.11 22
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 23
rs57095329
MIR3142HG
0.677 0.480 5 160467840 intron variant A/G snv 7.8E-02 25
rs1800450
MBL2
0.662 0.640 10 52771475 missense variant C/T snv 0.14 0.11 26
rs121917864
TLR2
0.645 0.520 4 153704936 missense variant C/T snv 8.8E-05 9.8E-05 31
rs909253
LTA ; LOC100287329
0.641 0.600 6 31572536 intron variant A/G;T snv 34
rs187084
TLR9
0.641 0.480 3 52227015 intron variant A/G snv 0.38 36
rs1800625
AGER ; PBX2
0.641 0.680 6 32184665 upstream gene variant A/G snv 0.15 39
rs953038635
SOD2
0.590 0.800 6 159692720 missense variant G/A;T snv 8.0E-06 51
rs1883832
CD40
0.581 0.680 20 46118343 5 prime UTR variant T/C snv 0.75 0.80 52
rs2066844
NOD2
0.587 0.520 16 50712015 missense variant C/T snv 2.6E-02 2.9E-02 54
rs361525
TNF
0.562 0.760 6 31575324 upstream gene variant G/A snv 4.6E-02 62
rs1024611 0.568 0.800 17 34252769 upstream gene variant A/G snv 0.28 63
rs1061170
CFH
0.561 0.720 1 196690107 missense variant C/T snv 0.68 0.64 72
rs1800796
IL6-AS1 ; STEAP1B ; IL6
0.555 0.760 7 22726627 non coding transcript exon variant G/C snv 9.9E-02 74
rs2070600
AGER
0.561 0.760 6 32183666 missense variant C/T snv 5.3E-02 3.6E-02 82
rs5743708
TLR2
0.525 0.800 4 153705165 missense variant G/A snv 1.7E-02 1.8E-02 98
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs1800871
IL19 ; IL10
0.508 0.800 1 206773289 5 prime UTR variant A/G snv 0.69 108
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113