DisGeNET - a database of gene-disease associations

List of associated variants

Chronic Periodontitis, C0266929

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs1800871	IL19 ; IL10	0.508	0.800	1	206773289	5 prime UTR variant	A/G	snv		0.69	108
rs20417	PACERR ; PTGS2	0.576	0.600	1	186681189	non coding transcript exon variant	C/G;T	snv			57
rs5275	PTGS2	0.583	0.560	1	186673926	3 prime UTR variant	A/G;T	snv			55
rs1801274	FCGR2A	0.597	0.800	1	161509955	missense variant	A/C;G	snv	4.0E-06; 0.48		46
rs689466	PACERR ; PTGS2	0.637	0.640	1	186681619	upstream gene variant	T/C	snv		0.17	33
rs1050501	FCGR2B	0.732	0.440	1	161674008	missense variant	T/C	snv	0.16	0.19	15
rs3811463	LIN28A	0.752	0.400	1	26427451	3 prime UTR variant	T/A;C	snv			14
rs396991	FCGR3A	0.742	0.480	1	161544752	missense variant	A/C;G;T	snv	0.33; 4.1E-06		14
rs4612666	NLRP3	0.763	0.440	1	247435768	intron variant	T/C	snv		0.65	10
rs1342913	BRINP3	0.851	0.040	1	190151895	intron variant	G/A	snv		0.61	4
rs1041163	VCAM1	0.882	0.160	1	100718269	upstream gene variant	T/C	snv		0.18	3
rs3795391	S100A8	0.882	0.040	1	153390629	non coding transcript exon variant	T/C	snv		8.3E-02	3
rs3806232	S100A8	0.882	0.040	1	153391654	upstream gene variant	T/C	snv		0.15	3
rs1058885	CSF1	0.925	0.080	1	109923844	missense variant	T/C	snv	0.38	0.39	2
rs1171989978	PTPN7	1.000	0.040	1	202159420	missense variant	G/A	snv	4.0E-06		1
rs2297706	CSF1	1.000	0.040	1	109914244	intron variant	C/A;T	snv	0.22	0.25	1
rs333967	CSF1	1.000	0.040	1	109917151	intron variant	C/T	snv		0.28	1
rs16944	IL1B	0.531	0.920	2	112837290	upstream gene variant	A/G	snv		0.57	92
rs1143634	IL1B	0.597	0.680	2	112832813	synonymous variant	G/A	snv	0.19	0.19	52
rs1143627	IL1B	0.605	0.760	2	112836810	5 prime UTR variant	G/A	snv		0.56	47
rs1800587	IL1A	0.620	0.720	2	112785383	upstream gene variant	G/A;C	snv		0.32	43
rs1027009063	KIDINS220	0.925	0.040	2	8802974	stop gained	G/A	snv			2
rs2241766	ADIPOQ ; ADIPOQ-AS1	0.608	0.720	3	186853103	synonymous variant	T/C;G	snv	8.0E-06; 0.13		48