Disease: Parkinson Disease
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs104893877
SNCA
0.614 0.360 4 89828149 missense variant C/T snv 59
rs121912438
SOD1
0.605 0.520 21 31667299 missense variant G/A;C;T snv 1.2E-05; 8.0E-06 58
rs75932628
LOC105375056 ; TREM2
0.662 0.480 6 41161514 missense variant C/A;T snv 6.8E-05; 2.6E-03 28
rs1799990
PRNP
0.683 0.440 20 4699605 missense variant A/G snv 0.31 0.33 23
rs143624519
MAPT
0.724 0.240 17 45991484 missense variant G/A;T snv 1.5E-03; 1.2E-05 17
rs5848
FAM171A2 ; GRN
0.708 0.120 17 44352876 3 prime UTR variant C/T snv 0.41 17
rs1990622 0.742 0.200 7 12244161 downstream gene variant A/G snv 0.52 16
rs367543041
TARDBP
0.742 0.200 1 11022553 missense variant G/A;C snv 3.0E-05 15
rs3173615
TMEM106B
0.807 0.200 7 12229791 missense variant C/A;G snv 0.49 12
rs121909329
VCP
0.763 0.200 9 35065363 missense variant C/A;G;T snv 11
rs121909330
VCP
0.752 0.200 9 35065364 missense variant G/A;C;T snv 11
rs121909334
VCP
0.752 0.200 9 35065255 missense variant C/T snv 1.6E-05 10
rs767543900
MAPT
0.790 0.120 17 45971879 missense variant A/C;G snv 4.0E-06 10
rs33949390
LRRK2
0.776 0.160 12 40320043 missense variant G/A;C;T snv 1.6E-04; 1.9E-03; 8.0E-06 9
rs3849942
C9orf72 ; LOC107987057
0.776 0.200 9 27543283 non coding transcript exon variant T/A;C snv 9
rs34015634
LRRK2
0.851 0.120 12 40340380 missense variant T/C snv 3.2E-05 1.4E-05 8
rs142444896
CHCHD2
0.807 0.120 7 56106409 missense variant G/A snv 9.3E-03 7.5E-03 6
rs2234253
TREM2 ; LOC105375056
0.827 0.120 6 41161367 missense variant G/A;C;T snv 1.9E-04; 1.0E-02 5
rs363371 0.882 0.120 10 117226885 TF binding site variant G/A snv 0.19 5
rs4877365
DAPK1
0.851 0.120 9 87540777 intron variant G/A snv 0.28 4
rs4878104
DAPK1
0.851 0.120 9 87578076 intron variant C/T snv 0.40 4
rs1291370551
GRN
0.882 0.120 17 44349468 missense variant T/G snv 4.0E-06 3
rs1181028283
C22orf15 ; CHCHD10
0.925 0.120 22 23766215 stop gained G/A snv 4.3E-06 2
rs1470543813
IGFALS ; SPSB3
0.925 0.120 16 1792093 stop gained G/A snv 4.3E-06 2
rs363324 0.925 0.120 10 117229651 intergenic variant G/A snv 0.57 2