DisGeNET - a database of gene-disease associations

List of associated variants

Human papilloma virus infection, C0343641

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs175080	MLH3	0.776	0.240	14	75047125	missense variant	G/A	snv	0.40	0.43	9
rs807183	ATG4A	0.851	0.120	X	108094263	intron variant	G/A	snv		0.51	4
rs8305	POLI	0.882	0.120	18	54294435	missense variant	G/A	snv	0.72	0.78	4
rs17102999	MLH3	0.925	0.120	14	75046831	missense variant	G/A	snv	1.3E-02	9.8E-03	2
rs7873784	TLR4	0.752	0.440	9	117716658	3 prime UTR variant	G/A;C;T	snv			11
rs3761548	FOXP3	0.620	0.680	X	49261784	intron variant	G/A;T	snv			42
rs1042522	TP53	0.426	0.800	17	7676154	missense variant	G/C;T	snv	0.67		242
rs807181	PSMD10 ; ATG4A	0.851	0.120	X	108090354	intron variant	G/C;T	snv			4
rs878854066	TP53	0.439	0.800	17	7676153	missense variant	GG/AC	mnv			213
rs333	CCR5 ; CCR5AS	0.667	0.520	3	46373453	frameshift variant	GTCAGTATCAATTCTGGAAGAATTTCCAGACA/-	delins		7.3E-02	23
rs25487	XRCC1	0.441	0.800	19	43551574	missense variant	T/C	snv	0.68	0.71	205
rs1800896	IL19 ; IL10	0.507	0.800	1	206773552	intron variant	T/C	snv		0.41	113
rs2232365	FOXP3	0.716	0.480	X	49259429	intron variant	T/C	snv			16
rs2232641	LIG4	0.851	0.160	13	108209297	missense variant	T/C	snv	1.5E-03	5.7E-04	4
rs3087399	REV1	0.882	0.120	2	99438696	missense variant	T/C	snv	0.13	0.17	4
rs2516448		0.827	0.120	6	31422633	intron variant	T/C;G	snv			10
rs1800872	IL19 ; IL10	0.495	0.840	1	206773062	5 prime UTR variant	T/G	snv		0.69	119