Disease: Malignant neoplasm of stomach
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs397507444
MTHFR
0.457 0.714 1 11794407 missense variant T/G snp 169
rs1799945
HFE ; LOC108783645
0.475 0.679 6 26090951 missense variant C/G snp 0.11 9.9E-02 152
rs25487
XRCC1
0.485 0.679 19 43551574 missense variant T/C snp 0.68 0.72 119
rs1799782
XRCC1
0.523 0.607 19 43553422 stop gained G/A snp 9.5E-02 7.1E-02 84
rs13181
KLC3 ; ERCC2
0.525 0.536 19 45351661 stop gained T/A,G snp 4.0E-06; 0.32 0.32 82
rs4880
SOD2
0.536 0.643 6 159692840 missense variant A/G snp 0.48 0.47 81
rs1052133
CAMK1 ; OGG1
0.533 0.643 3 9757089 missense variant C/G snp 0.27 0.22 77
rs1801282
PPARG
0.543 0.679 3 12351626 missense variant C/G snp 0.11 1.0E-01 77
rs1805087
MTR
0.538 0.679 1 236885200 missense variant A/G snp 0.20 0.21 75
rs1805192
PPARG
0.545 0.679 3 12379739 missense variant C/G snp 75
rs671
ALDH2
0.593 0.464 12 111803962 missense variant G/A snp 1.9E-02 1.3E-02 61
rs1801394
MTRR ; FASTKD3
0.577 0.643 5 7870860 missense variant A/G snp 0.47 0.46 60
rs1799793
ERCC2
0.585 0.500 19 45364001 missense variant C/A,T snp 7.1E-06; 0.29 0.27 51
rs1229984
ADH1B
0.622 0.393 4 99318162 missense variant T/C,G snp 0.90 0.94 50
rs25489
XRCC1
0.587 0.571 19 43552260 stop lost C/G,T snp 8.5E-06; 7.1E-02 3.2E-05; 5.5E-02 48
rs1800566
NQO1
0.605 0.571 16 69711242 missense variant G/A snp 0.25 0.21 41
rs505922 0.724 0.357 None NA snp 0.37 24
rs698
ADH1C
0.744 0.179 4 99339632 missense variant T/A,C snp 0.35 0.34 13
rs889312 0.734 0.179 5 56736057 regulatory region variant C/A snp 0.69 12
rs3790843
NR5A2
0.821 0.143 1 200041696 intron variant C/T snp 0.31 6
rs3790844
NR5A2
0.846 0.107 1 200038304 intron variant A/C,G snp 0.26 5