DisGeNET - a database of gene-disease associations

List of associated variants

Malignant neoplasm of prostate, C0376358

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs6542993	NPAS2	0.925	0.080	2	100824202	intron variant	T/A	snv		0.33	2
rs10165970	NPAS2	0.708	0.320	2	100840527	intron variant	G/A	snv		0.16	18
rs17024869	NPAS2	0.708	0.320	2	100843581	intron variant	T/C	snv		8.3E-02	18
rs17024926	NPAS2	0.851	0.120	2	100889540	intron variant	T/C	snv		0.34	4
rs1369481	NPAS2	0.925	0.080	2	100895497	intron variant	T/C	snv		0.77	2
rs895521	NPAS2	0.925	0.080	2	100935633	intron variant	T/C	snv		0.84	2
rs895520	NPAS2	0.689	0.320	2	100961475	intron variant	G/A	snv		0.35	23
rs7581886	NPAS2	0.708	0.320	2	100964784	intron variant	C/T	snv		0.92	18
rs746924	TBC1D8 ; RPL31	0.925	0.080	2	101008009	missense variant	T/C	snv	0.61	0.61	2
rs779805	VHL	0.851	0.120	3	10141653	5 prime UTR variant	G/A;C	snv			4
rs4764695	HELLPAR ; LINC02456	0.925	0.080	12	102363335	non coding transcript exon variant	A/G;T	snv			2
rs6218	LINC02456 ; HELLPAR ; IGF1	0.732	0.440	12	102399855	3 prime UTR variant	A/G	snv		2.1E-02	13
rs5742612	LOC105369944 ; IGF1	0.752	0.440	12	102481086	intron variant	A/G	snv		5.6E-02	11
rs35767	IGF1 ; LOC105369944	0.763	0.360	12	102481791	upstream gene variant	A/C;G;T	snv			13
rs7965399	LOC105369944	0.851	0.120	12	102497908	regulatory region variant	T/A;C	snv			5
rs7978742	LOC105369944	0.925	0.080	12	102497974	regulatory region variant	A/G	snv		0.14	2
rs10895304		0.925	0.080	11	102519261	downstream gene variant	A/G	snv		0.20	2
rs11568818	MMP7	0.763	0.280	11	102530930	upstream gene variant	T/A;C	snv			15
rs3850699	LOC105378460 ; TRIM8	0.925	0.080	10	102654464	non coding transcript exon variant	A/G	snv		0.32	2
rs5490	ICAM1 ; LOC105372272	0.925	0.080	19	10271151	5 prime UTR variant	A/C	snv	1.6E-02	6.7E-02	2
rs1799750	WTAPP1 ; MMP1	0.592	0.760	11	102799765	intron variant	C/-	delins		0.50	48
rs619824	WBP1L	0.925	0.080	10	102821531	intron variant	A/C	snv		0.50	2
rs743572	CYP17A1	0.672	0.360	10	102837395	5 prime UTR variant	A/G;T	snv	0.40; 8.1E-06		24
rs2486758	CYP17A1	0.742	0.160	10	102837723	upstream gene variant	T/C	snv		0.18	11
rs17115149	CYP17A1	0.882	0.160	10	102837961	upstream gene variant	G/A;T	snv			4