Disease: Diabetes Mellitus, Non-Insulin-Dependent
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 262
rs3184504
SH2B3 ; ATXN2
0.572 0.600 12 111446804 missense variant T/A;C;G snv 0.67 92
rs780094
GCKR
0.658 0.400 2 27518370 intron variant T/C snv 0.67 62
rs7412
APOE
0.641 0.640 19 44908822 missense variant C/T snv 6.2E-02 7.9E-02 47
rs964184
ZPR1
0.716 0.440 11 116778201 3 prime UTR variant G/C snv 0.82 47
rs4420638
APOC1
0.708 0.520 19 44919689 downstream gene variant A/G snv 0.18 43
rs10455872
LPA
0.662 0.320 6 160589086 intron variant A/G snv 4.3E-02 33
rs405509
APOE
0.667 0.480 19 44905579 upstream gene variant T/G snv 0.58 30
rs11591147
PCSK9
0.677 0.360 1 55039974 missense variant G/A;T snv 1.2E-02 28
rs579459 0.752 0.320 9 133278724 upstream gene variant C/T snv 0.81 28
rs599839
PSRC1
0.724 0.360 1 109279544 downstream gene variant G/A;C snv 27
rs3764261 0.732 0.280 16 56959412 upstream gene variant C/A snv 0.31 26
rs10401969
SUGP1
0.776 0.240 19 19296909 intron variant T/C snv 0.10 25
rs635634 0.882 0.160 9 133279427 upstream gene variant T/A;C snv 22
rs1169288
HNF1A-AS1 ; HNF1A
0.776 0.160 12 120978847 missense variant A/C;T snv 0.35 21
rs562338 0.807 0.160 2 21065449 intergenic variant A/G snv 0.69 21
rs6857
NECTIN2
0.790 0.240 19 44888997 3 prime UTR variant C/T snv 0.13 16
rs688
LDLR
0.742 0.400 19 11116926 synonymous variant C/T snv 0.39 0.34 16
rs12916
HMGCR ; CERT1
0.807 0.240 5 75360714 3 prime UTR variant T/C;G snv 0.37 12
rs2000999
HPR ; TXNL4B
1.000 0.080 16 72074194 intron variant G/A snv 0.16 7
rs679899
APOB
0.925 0.080 2 21028042 missense variant G/A snv 0.49 0.39 7
rs3794991
GATAD2A
1.000 0.080 19 19499787 intron variant C/G;T snv 7.4E-02 5
rs17238484
HMGCR
1.000 0.080 5 75352671 intron variant G/T snv 0.22 4