DisGeNET - a database of gene-disease associations

List of shared variants

Serum LDL cholesterol measurement, C0428474

Disease: C-reactive protein measurement

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs780094	GCKR	0.658	0.400	2	27518370	intron variant	T/C	snv		0.67	62
rs2075650	TOMM40	0.662	0.360	19	44892362	intron variant	A/G	snv	0.13	0.13	45
rs4420638	APOC1	0.708	0.520	19	44919689	downstream gene variant	A/G	snv		0.18	43
rs405509	APOE	0.667	0.480	19	44905579	upstream gene variant	T/G	snv		0.58	30
rs579459		0.752	0.320	9	133278724	upstream gene variant	C/T	snv		0.81	28
rs10401969	SUGP1	0.776	0.240	19	19296909	intron variant	T/C	snv		0.10	25
rs646776	CELSR2	0.752	0.240	1	109275908	downstream gene variant	C/T	snv		0.74	25
rs629301	CELSR2	0.851	0.120	1	109275684	3 prime UTR variant	G/T	snv		0.74	22
rs1169288	HNF1A-AS1 ; HNF1A	0.776	0.160	12	120978847	missense variant	A/C;T	snv	0.35		21
rs174546	FADS1 ; FADS2	0.807	0.200	11	61802358	3 prime UTR variant	C/T	snv		0.28	17
rs6857	NECTIN2	0.790	0.240	19	44888997	3 prime UTR variant	C/T	snv		0.13	16
rs157580	TOMM40	0.882	0.160	19	44892009	intron variant	G/A	snv		0.69	14
rs2228603	NCAN	0.790	0.360	19	19219115	missense variant	C/A;T	snv	2.8E-05; 5.9E-02		12
rs2650000	HNF1A-AS1	0.851	0.200	12	120951159	intron variant	A/C	snv		0.70	10
rs9987289	LOC157273	1.000	0.040	8	9325848	non coding transcript exon variant	A/G	snv		0.87	10
rs2126259	LOC157273	1.000		8	9327636	intron variant	T/C	snv		0.87	9
rs630014	ABO			9	133274306	intron variant	G/A;C	snv			9
rs12721046	APOC1			19	44917997	intron variant	G/A	snv		0.11	8
rs1160985	TOMM40	1.000	0.080	19	44900155	intron variant	C/T	snv		0.52	6