DisGeNET - a database of gene-disease associations

List of shared variants

Neurodegenerative Disorders, C0524851

Disease: Parkinson Disease

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs3857059	SNCA	1.000	0.040	4	89754087	intron variant	A/G;T	snv			2
rs143061887	PSEN2	0.925	0.080	1	226881960	missense variant	C/T	snv	1.6E-05	5.6E-05	3
rs2275294	ZNF512B	0.925	0.080	20	63962894	intron variant	G/A	snv		0.25	3
rs397515634	UCHL1-AS1 ; UCHL1	0.925	0.040	4	41256996	missense variant	A/C	snv	4.0E-06		3
rs2435200	MAPT	0.925	0.080	17	45994485	intron variant	G/A	snv		0.40	5
rs121917767	UCHL1	0.827	0.120	4	41260751	missense variant	C/A;G;T	snv	4.0E-05; 4.0E-06; 2.0E-05		6
rs75548401	GBA	0.882	0.160	1	155236246	missense variant	G/A	snv	5.9E-03	6.2E-03	6
rs9468	MAPT	0.882	0.080	17	46024197	3 prime UTR variant	T/C	snv	0.15	0.14	6
rs35801418	LRRK2	0.827	0.120	12	40321114	missense variant	A/G	snv			7
rs1052553	MAPT	0.827	0.200	17	45996523	synonymous variant	A/G	snv	0.14	0.15	8
rs34015634	LRRK2	0.851	0.120	12	40340380	missense variant	T/C	snv	3.2E-05	1.4E-05	8
rs431905511	SNCA	0.827	0.080	4	89828154	missense variant	C/T	snv			9
rs5030732	UCHL1 ; UCHL1-AS1	0.790	0.160	4	41257616	missense variant	C/A	snv	0.24	0.16	10
rs121909329	VCP	0.763	0.200	9	35065363	missense variant	C/A;G;T	snv			11
rs3173615	TMEM106B	0.807	0.200	7	12229791	missense variant	C/A;G	snv	0.49		12
rs104893875	SNCA	0.742	0.120	4	89828170	missense variant	C/T	snv	4.0E-06		13
rs121912443	SOD1	0.732	0.160	21	31663857	missense variant	A/G	snv			15
rs1990622		0.742	0.200	7	12244161	downstream gene variant	A/G	snv		0.52	16
rs143624519	MAPT	0.724	0.240	17	45991484	missense variant	G/A;T	snv	1.5E-03; 1.2E-05		17
rs5848	FAM171A2 ; GRN	0.708	0.120	17	44352876	3 prime UTR variant	C/T	snv		0.41	17
rs104893878	SNCA ; SNCA-AS1	0.732	0.160	4	89835580	missense variant	C/G	snv			21
rs1799990	PRNP	0.683	0.440	20	4699605	missense variant	A/G	snv	0.31	0.33	23
rs156697	GSTO2	0.672	0.560	10	104279427	missense variant	A/G;T	snv	0.35		25
rs646776	CELSR2	0.752	0.240	1	109275908	downstream gene variant	C/T	snv		0.74	25
rs75932628	LOC105375056 ; TREM2	0.662	0.480	6	41161514	missense variant	C/A;T	snv	6.8E-05; 2.6E-03		28