Disease: Secondary malignant neoplasm of lymph node
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs12774070
ADAMTS14
0.925 0.120 10 70753879 missense variant C/A;G snv 0.23 0.19 4
rs2071504
POLR2A
0.882 0.120 17 7502618 non coding transcript exon variant C/T snv 0.18 0.17 4
rs61573157
ADAMTS14
0.882 0.160 10 70760503 missense variant C/T snv 8.6E-02 7.5E-02 6
rs11671784
MIR24-2 ; LOC284454 ; MIR23A ; MIR27A
0.790 0.240 19 13836482 non coding transcript exon variant G/A snv 1.2E-02 1.2E-02 9
rs944289 0.742 0.200 14 36180040 upstream gene variant C/T snv 0.45 16
rs187115
CD44
0.695 0.320 11 35154612 intron variant T/C snv 0.37 22
rs2294008
PSCA ; JRK
0.672 0.320 8 142680513 5 prime UTR variant C/T snv 0.46 0.45 28
rs752021744
PIK3CB
0.689 0.440 3 138759306 missense variant T/C snv 1.2E-05 29
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs920778
HOTAIR
0.633 0.480 12 53966448 intron variant G/A snv 0.57 36
rs727503094
LRRC56 ; HRAS
0.633 0.440 11 534287 missense variant GC/AG;AT;TA;TT mnv 41
rs895819
MIR23A ; LOC284454 ; MIR27A ; MIR24-2
0.623 0.560 19 13836478 non coding transcript exon variant T/A;C;G snv 0.34 0.38 46
rs2070744
NOS3
0.608 0.680 7 150992991 intron variant C/T snv 0.70 54
rs1051740
EPHX1
0.592 0.760 1 225831932 missense variant T/C snv 0.32 0.27 56
rs351855
FGFR4
0.597 0.560 5 177093242 missense variant G/A snv 0.33 0.26 58
rs4938723
MIR34C ; BTG4 ; MIR34B ; LOC728196
0.574 0.680 11 111511840 intron variant T/C snv 0.32 60
rs11615
ERCC1
0.572 0.640 19 45420395 synonymous variant A/G snv 0.50 0.55 62
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 62
rs1136410
PARP1
0.559 0.760 1 226367601 missense variant A/G snv 0.21 0.15 70
rs1057519847
EGFR
0.570 0.560 7 55191821 missense variant CT/AG mnv 72
rs1057519848
EGFR
0.570 0.560 7 55191822 missense variant TG/GT mnv 72
rs104894230
HRAS ; LRRC56
0.564 0.600 11 534288 missense variant C/A;G;T snv 73
rs121434568
EGFR
0.568 0.560 7 55191822 missense variant T/A;G snv 73
rs4880
SOD2
0.500 0.840 6 159692840 missense variant A/G snv 0.48 0.47 131