Disease: Glioma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2853677
TERT
0.724 0.240 5 1287079 3 prime UTR variant G/A snv 0.63 19
rs3025039
VEGFA
0.576 0.720 6 43784799 3 prime UTR variant C/T snv 0.13 62
rs3212227
IL12B
0.566 0.840 5 159315942 3 prime UTR variant T/G snv 0.26 65
rs3749474
TMEM165 ; CLOCK
0.724 0.320 4 55434518 3 prime UTR variant C/T snv 0.33 17
rs3787016
POLR2E
0.677 0.280 19 1090804 intron variant A/G snv 0.78 24
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs397517132
EGFR
0.623 0.280 7 55191846 missense variant A/T snv 48
rs4073
CXCL8
0.566 0.800 4 73740307 upstream gene variant A/T snv 0.46 64
rs4246215
FADS2 ; FEN1
0.677 0.320 11 61796827 3 prime UTR variant G/C;T snv 29
rs4938723
MIR34C ; BTG4 ; MIR34B ; LOC728196
0.574 0.680 11 111511840 intron variant T/C snv 0.32 60
rs4977574
CDKN2B-AS1
0.695 0.520 9 22098575 intron variant A/G;T snv 26
rs5275
PTGS2
0.583 0.560 1 186673926 3 prime UTR variant A/G;T snv 55
rs5744533
POLK ; CERT1
0.807 0.120 5 75510279 intron variant C/A;T snv 6
rs7164773
RORA
0.790 0.240 15 60775749 intron variant C/A;T snv 10
rs7581886
NPAS2
0.708 0.320 2 100964784 intron variant C/T snv 0.92 18
rs766914563
LOC112268426 ; CXCR4
0.732 0.320 2 136115082 synonymous variant C/T snv 7.0E-06 16
rs78378222
TP53
0.662 0.360 17 7668434 3 prime UTR variant T/G snv 8.3E-03 37
rs786204929
PTEN
0.752 0.200 10 87933144 stop gained G/A;T snv 12
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 93
rs7904519
TCF7L2
0.763 0.240 10 113014168 intron variant A/G snv 0.55 9
rs7963551
RAD52
0.807 0.160 12 912349 3 prime UTR variant T/G snv 0.13 7
rs833061
VEGFA
0.605 0.600 6 43769749 upstream gene variant C/G;T snv 42
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs895520
NPAS2
0.689 0.320 2 100961475 intron variant G/A snv 0.35 23
rs920778
HOTAIR
0.633 0.480 12 53966448 intron variant G/A snv 0.57 36