DisGeNET - a database of gene-disease associations

List of associated variants

Secondary malignant neoplasm of lymph node, C0686619

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs1536309	MIR146B	0.851	0.160	10	102435445	upstream gene variant	A/G	snv		0.32	7
rs11225395	MMP8	0.776	0.360	11	102725749	intron variant	A/C;G	snv			11
rs17655	BIVM-ERCC5 ; ERCC5	0.597	0.560	13	102875652	missense variant	G/C	snv	0.28	0.30	52
rs1130233	AKT1	0.742	0.480	14	104773557	synonymous variant	C/T	snv	0.30	0.23	13
rs1190271	POPDC3	1.000	0.080	6	105176946	intron variant	G/A;C	snv			1
rs4938723	MIR34C ; BTG4 ; MIR34B ; LOC728196	0.574	0.680	11	111511840	intron variant	T/C	snv		0.32	60
rs1143643	IL1B	0.790	0.320	2	112830725	intron variant	C/T	snv		0.29	10
rs1143633	IL1B	0.752	0.280	2	112832890	intron variant	C/G;T	snv			11
rs1143630	IL1B	0.827	0.160	2	112834078	intron variant	T/A;G	snv			5
rs3917356	IL1B	0.882	0.160	2	112834786	intron variant	C/T	snv		0.39	4
rs290481	TCF7L2	0.827	0.200	10	113164066	intron variant	C/T	snv		0.20	9
rs10754339	VTCN1	0.882	0.120	1	117147650	3 prime UTR variant	G/A	snv	0.88	0.76	3
rs4986790	TLR4	0.438	0.800	9	117713024	missense variant	A/G;T	snv	6.1E-02; 4.0E-06		223
rs4986791	TLR4	0.456	0.840	9	117713324	missense variant	C/T	snv	5.7E-02	4.9E-02	182
rs397507444	MTHFR	0.405	0.880	1	11794407	missense variant	T/G	snv			306
rs77382849	EIF3A	0.851	0.160	10	119050586	missense variant	C/T	snv	8.8E-03	4.4E-03	4
rs11064	TNFAIP8	0.807	0.120	5	119393693	3 prime UTR variant	A/G	snv		0.27	9
rs7628626	TIMMDC1 ; CD80	0.925	0.120	3	119525574	3 prime UTR variant	A/C	snv		0.82	2
rs1219648	FGFR2	0.716	0.320	10	121586676	intron variant	A/G;T	snv			17
rs9856	XIAP	0.925	0.120	X	123911791	3 prime UTR variant	C/T	snv	0.57		4
rs8371	XIAP	0.925	0.120	X	123912065	3 prime UTR variant	C/T	snv	0.25	0.19	4
rs1016343	PCAT2 ; PCAT1 ; PRNCR1 ; CASC19	0.807	0.240	8	127081052	non coding transcript exon variant	C/T	snv		0.20	8
rs13252298	PCAT2 ; PCAT1 ; PRNCR1 ; CASC19	0.827	0.160	8	127082911	non coding transcript exon variant	A/G	snv		0.24	8
rs10505477	CASC8 ; PCAT1 ; POU5F1B	0.658	0.400	8	127395198	intron variant	A/G	snv		0.40	31
rs6983267	PCAT1 ; CCAT2 ; CASC8 ; POU5F1B	0.578	0.440	8	127401060	non coding transcript exon variant	G/T	snv		0.37	62