Disease: Malignant neoplasm of breast
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs10069690
TERT
0.595 0.560 5 1279675 intron variant C/T snv 0.36 53
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 31
rs11655505
NBR2 ; BRCA1
0.776 0.160 17 43126360 intron variant G/A snv 0.31 8
rs1271572
ESR2
0.708 0.400 14 64295199 intron variant A/C;T snv 16
rs13281615
CASC8 ; POU5F1B ; PCAT1 ; CASC21
0.716 0.360 8 127343372 intron variant A/G snv 0.43 18
rs153109
IL27
0.623 0.600 16 28507775 intron variant T/C snv 0.43 37
rs1544410
VDR
0.542 0.760 12 47846052 intron variant C/A;G;T snv 78
rs17251221
CASR
0.724 0.360 3 122274400 intron variant A/G snv 0.11 18
rs1899663
HOTAIR
0.683 0.280 12 53967210 intron variant C/A snv 0.28 22
rs2107425
MRPL23 ; H19
0.732 0.280 11 1999845 intron variant C/T snv 16
rs2665390
LOC107986148 ; TIPARP
0.776 0.160 3 156679960 intron variant C/T snv 0.92 8
rs2699887
PIK3CA ; LOC101928739
0.763 0.280 3 179148620 intron variant C/T snv 0.18 11
rs2981582
FGFR2
0.695 0.360 10 121592803 intron variant A/G snv 0.58 21
rs638820
GSTM4 ; GSTM2
0.827 0.160 1 109667284 intron variant G/A snv 0.52 5
rs920778
HOTAIR
0.633 0.480 12 53966448 intron variant G/A snv 0.57 36
rs11571833
BRCA2
0.608 0.360 13 32398489 stop gained A/T snv 6.6E-03 6.0E-03 43
rs118203998
PALB2
0.790 0.400 16 23603471 stop gained G/C;T snv 1.6E-05; 4.0E-06 11
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs137852986
BRIP1
0.732 0.440 17 61716051 stop gained G/A snv 1.7E-04 1.5E-04 13
rs200389141
BLM
0.776 0.320 15 90761015 stop gained C/A;T snv 4.1E-06; 1.4E-04 1.7E-04 11
rs3177427
GSTZ1
0.827 0.160 14 77326864 stop gained G/A;C;T snv 5
rs3212986
CD3EAP ; ERCC1
0.620 0.400 19 45409478 stop gained C/A;G;T snv 0.29; 4.3E-06; 4.3E-06 42
rs34301344
ARL11
0.689 0.400 13 49630893 stop gained G/A snv 9.7E-03 7.9E-03 22
rs387906659
AKT2
0.742 0.280 19 40257052 stop gained C/A;T snv 14
rs587782818
RAD51C
0.790 0.160 17 58703325 stop gained C/G snv 6.4E-05; 4.0E-06 1.4E-05 8