DisGeNET - a database of gene-disease associations

List of shared variants

Major Depressive Disorder, C1269683

Disease: Depressive disorder

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs61888800	BDNF	0.851	0.080	11	27700731	5 prime UTR variant	G/T	snv		0.19	5
rs6265	BDNF ; BDNF-AS	0.436	0.760	11	27658369	missense variant	C/T	snv	0.19	0.15	272
rs759834365	BDNF-AS ; BDNF	0.448	0.760	11	27658456	missense variant	C/T	snv	1.2E-05		237
rs1006737	CACNA1C	0.695	0.120	12	2236129	intron variant	G/A	snv		0.36	27
rs1043307	PSMD9	0.776	0.360	12	121915890	missense variant	A/C;G	snv			14
rs120074175	TPH2	0.827	0.080	12	72031544	missense variant	G/A	snv	1.2E-05	7.0E-06	7
rs1545843	LOC107984536	0.827	0.120	12	84170289	intron variant	G/A	snv		0.52	6
rs2230912	P2RX7 ; LOC105370032	0.752	0.280	12	121184393	missense variant	A/G	snv	0.13	0.12	16
rs2287161	MTERF2	0.827	0.080	12	106987362	upstream gene variant	C/G;T	snv			7
rs5443	CDCA3 ; GNB3	0.532	0.760	12	6845711	synonymous variant	C/T	snv	0.36	0.44	106
rs7296288	DHH	0.851	0.080	12	49086185	upstream gene variant	A/C	snv		0.50	5
rs7305115	TPH2	0.807	0.200	12	71979082	synonymous variant	A/C;G;T	snv	4.0E-06; 0.56		8
rs794727961	CACNA1C	0.851	0.080	12	2512979	missense variant	G/A	snv			5
rs6311	HTR2A	0.645	0.640	13	46897343	upstream gene variant	C/T	snv		0.40	41
rs6313	HTR2A	0.562	0.640	13	46895805	synonymous variant	G/A	snv	0.41	0.40	82
rs6314	HTR2A	0.677	0.360	13	46834899	missense variant	G/A	snv	7.9E-02	9.5E-02	23
rs7997012	HTR2A	0.807	0.080	13	46837850	intron variant	A/G	snv		0.69	11
rs1256049	ESR2	0.645	0.560	14	64257333	synonymous variant	C/T	snv	6.7E-02	6.3E-02	32
rs4986938	ESR2	0.641	0.600	14	64233098	3 prime UTR variant	C/T	snv	0.31	0.33	35
rs12912233	RORA	0.851	0.120	15	60974897	intron variant	C/T	snv		0.38	5
rs1432441	MAP2K1	0.882	0.040	15	66426943	intron variant	G/A	snv		0.27	3
rs1549854	MAP2K1	0.882	0.040	15	66404397	intron variant	A/C;G	snv		0.44	3
rs2242446	SLC6A2	0.776	0.080	16	55656513	5 prime UTR variant	C/A;T	snv			9
rs28386840		0.827	0.080	16	55652906	upstream gene variant	T/A;C	snv			6
rs5569	SLC6A2	0.742	0.280	16	55697923	synonymous variant	G/A;C	snv	0.31; 4.0E-06		19