Disease: Malignant neoplasm of breast
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs6265
BDNF ; BDNF-AS
0.436 0.760 11 27658369 missense variant C/T snv 0.19 0.15 272
rs1801282
PPARG
0.500 0.840 3 12351626 missense variant C/G snv 0.11 8.9E-02 131
rs9939609
FTO
0.559 0.720 16 53786615 intron variant T/A snv 0.41 98
rs7903146
TCF7L2
0.554 0.680 10 112998590 intron variant C/G;T snv 93
rs3184504
SH2B3 ; ATXN2
0.572 0.600 12 111446804 missense variant T/A;C;G snv 0.67 92
rs1333049
CDKN2B-AS1
0.614 0.520 9 22125504 intron variant G/C snv 0.41 60
rs17782313 0.683 0.480 18 60183864 intergenic variant T/C snv 0.24 34
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 23
rs10811661 0.724 0.400 9 22134095 intergenic variant T/C snv 0.14 22
rs17817449
FTO
0.716 0.560 16 53779455 intron variant T/A;G snv 21
rs1045411
HMGB1
0.708 0.360 13 30459095 3 prime UTR variant C/T snv 0.20 18
rs1121980
FTO
0.807 0.240 16 53775335 intron variant G/A;C snv 18
rs676387
HSD17B1 ; LOC108783654
0.882 0.120 17 42554255 non coding transcript exon variant C/A snv 0.25 6
rs12286929 0.925 0.080 11 115151684 intergenic variant A/C;G snv 4
rs16851483
RASA2
0.925 0.080 3 141556594 intron variant G/T snv 6.7E-02 4
rs12422552 0.925 0.080 12 14260997 regulatory region variant G/C snv 0.30 3
rs17094222 0.925 0.080 10 100635683 intergenic variant T/C snv 0.17 3