Disease: Secondary malignant neoplasm of lymph node
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs11064
TNFAIP8
0.807 0.120 5 119393693 3 prime UTR variant A/G snv 0.27 9
rs11539752
LOC107984667 ; GZMB
0.882 0.120 14 24632383 missense variant G/C snv 0.21 0.26 5
rs2236338
GZMB
0.851 0.120 14 24631076 missense variant A/G snv 0.24 0.25 6
rs34214448
NME1 ; NME1-NME2
0.851 0.120 17 51154651 intron variant G/T snv 0.39 7
rs3748093
BRAF
0.925 0.120 7 140800651 intron variant T/A snv 1.5E-02 4
rs746429
SIPA1
0.882 0.120 11 65649963 synonymous variant G/A snv 0.31 0.30 8
rs13042395
SLC52A3
0.752 0.160 20 773867 intron variant C/T snv 5.9E-02 13
rs13252298
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.827 0.160 8 127082911 non coding transcript exon variant A/G snv 0.24 7
rs2607775
XPC ; LSM3
0.807 0.160 3 14178595 5 prime UTR variant C/G snv 0.42 0.43 8
rs3816527
PTX3 ; VEPH1
0.882 0.160 3 157437525 missense variant C/A snv 0.64 0.64 9
rs42490
RIPK2
0.882 0.160 8 89766285 intron variant G/A snv 0.60 4
rs931127
SIPA1 ; PCNX3
0.790 0.160 11 65637829 upstream gene variant G/A snv 0.49 12
rs16949649
NME1 ; NME1-NME2
0.776 0.200 17 51152947 upstream gene variant T/C snv 0.39 12
rs290481
TCF7L2
0.827 0.200 10 113164066 intron variant C/T snv 0.20 8
rs3020449
ESR2
0.807 0.200 14 64306674 intron variant A/G;T snv 10
rs1016343
PCAT2 ; PCAT1 ; PRNCR1 ; CASC19
0.807 0.240 8 127081052 non coding transcript exon variant C/T snv 0.20 5
rs11730582
SPP1
0.807 0.240 4 87975269 non coding transcript exon variant T/C snv 0.37 10
rs2302254
NME1-NME2 ; NME1
0.752 0.240 17 51153539 5 prime UTR variant C/T snv 0.22 15
rs2976392
JRK ; PSCA
0.724 0.240 8 142681514 3 prime UTR variant G/A snv 0.46 0.45 15
rs3809865
THCAT158 ; ITGB3
0.790 0.240 17 47311220 3 prime UTR variant T/A;G snv 11
rs74799832
RET
0.662 0.280 10 43121968 missense variant T/C snv 4.0E-06 21
rs1219648
FGFR2
0.716 0.320 10 121586676 intron variant A/G;T snv 16
rs1360485
HMGB1
0.742 0.320 13 30457747 3 prime UTR variant C/T snv 0.58 15
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs187115
CD44
0.695 0.320 11 35154612 intron variant T/C snv 0.37 22