DisGeNET - a database of gene-disease associations

List of shared variants

Primary malignant neoplasm, C1306459

Disease: Liver carcinoma

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs12338	CTSB	0.807	0.200	8	11853379	missense variant	G/A;C;T	snv	8.0E-06; 0.38; 2.4E-05		10
rs13706	CDC6	0.776	0.200	17	40300899	missense variant	G/A;C	snv	0.15; 8.0E-06		11
rs290481	TCF7L2	0.827	0.200	10	113164066	intron variant	C/T	snv		0.20	9
rs3212961	ERCC1	0.827	0.200	19	45419065	intron variant	G/A;T	snv	1.9E-04; 0.20		7
rs3757441	EZH2	0.752	0.200	7	148827660	intron variant	C/T	snv		0.80	12
rs7421861	LOC105373977 ; PDCD1	0.790	0.200	2	241853198	intron variant	A/G;T	snv			9
rs750521832	MMP8	0.732	0.200	11	102718452	missense variant	A/G	snv	4.0E-06		14
rs9261204	ZNRD1ASP	0.790	0.200	6	30037466	intron variant	A/G	snv		0.17	9
rs1044250	ANGPTL4	0.807	0.240	19	8371280	missense variant	C/T	snv	0.30	0.29	12
rs1047972	AURKA	0.716	0.240	20	56386407	missense variant	T/C	snv	0.85	0.84	19
rs1057519989	TP53	0.732	0.240	17	7674233	missense variant	C/A;G;T	snv			17
rs121912660	TP53	0.683	0.240	17	7673781	missense variant	C/A;G;T	snv			26
rs2228014	CXCR4	0.752	0.240	2	136115514	synonymous variant	G/A	snv	4.6E-02	3.5E-02	14
rs3754093	EXO1	0.776	0.240	1	241846814	upstream gene variant	A/G	snv		0.23	11
rs6553010	LOC105377596 ; MTNR1A	0.851	0.240	4	186535189	intron variant	G/A	snv		0.23	7
rs10012	CYP1B1 ; CYP1B1-AS1	0.716	0.280	2	38075247	missense variant	G/C	snv	0.31	0.36	16
rs1047840	EXO1	0.708	0.280	1	241878999	missense variant	G/A	snv	0.36	0.40	19
rs1049334	CAV1	0.851	0.280	7	116560326	3 prime UTR variant	G/A;T	snv			6
rs1805105	AXIN1	0.776	0.280	16	346264	synonymous variant	A/G	snv	0.61	0.69	11
rs2073498	RASSF1	0.763	0.280	3	50332115	missense variant	C/A	snv	9.6E-02	8.0E-02	12
rs2107425	MRPL23 ; H19	0.732	0.280	11	1999845	intron variant	C/T	snv			16
rs2167270	LEP	0.724	0.280	7	128241296	5 prime UTR variant	G/A	snv		0.37	17
rs2280883	FOXP3	0.827	0.280	X	49252667	intron variant	T/C	snv		0.30	9
rs3138053	NFKBIA	0.790	0.280	14	35405648	upstream gene variant	T/C	snv		0.26	10
rs36053993	MUTYH	0.677	0.280	1	45331556	missense variant	C/T	snv	3.0E-03	3.3E-03	31