Disease: Glioma
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1138272
GSTP1
0.611 0.600 11 67586108 missense variant C/T snv 5.9E-02 5.5E-02 42
rs11614913
HOXC6 ; MIR196A2
0.512 0.760 12 53991815 mature miRNA variant C/T snv 0.39 0.34 110
rs199613843
XRCC1
0.807 0.160 19 43551609 synonymous variant C/T snv 4.0E-06 7.0E-06 6
rs2070874
IL4
0.672 0.560 5 132674018 5 prime UTR variant C/T snv 0.28 0.28 27
rs2736098
TERT
0.600 0.600 5 1293971 synonymous variant C/T snv 0.29 0.22 46
rs3025039
VEGFA
0.576 0.720 6 43784799 3 prime UTR variant C/T snv 0.13 62
rs72554204
XRCC1
0.827 0.120 19 43546062 missense variant C/T snv 1.2E-04 1.3E-04 5
rs1799782
XRCC1
0.474 0.800 19 43553422 missense variant G/A snv 9.5E-02 7.0E-02 151
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 230
rs1805377
XRCC4
0.689 0.480 5 83353124 splice acceptor variant G/A snv 0.23 0.25 19
rs2307191
XRCC1
0.827 0.120 19 43553616 missense variant G/A snv 1.2E-03 4.8E-03 5
rs398652 0.752 0.240 14 56058851 intergenic variant G/A snv 0.24 9
rs5743708
TLR2
0.525 0.800 4 153705165 missense variant G/A snv 1.7E-02 1.8E-02 97
rs621559
CFAP57 ; LOC105378685 ; EBNA1BP2
0.827 0.080 1 43179740 intron variant G/A snv 0.18 5
rs861539
KLC1 ; XRCC3
0.519 0.680 14 103699416 missense variant G/A snv 0.29 0.30 103
rs920778
HOTAIR
0.633 0.480 12 53966448 intron variant G/A snv 0.57 36
rs148611340
XRCC1
0.790 0.120 19 43543621 missense variant G/A;C snv 4.0E-06; 1.2E-05 7
rs121913499
IDH1
0.605 0.520 2 208248389 missense variant G/A;C;T snv 40
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs1214285376
XRCC1
0.776 0.200 19 43543490 missense variant G/T snv 4.0E-06 8
rs878854066
TP53
0.439 0.800 17 7676153 missense variant GG/AC mnv 213
rs1870377
KDR
0.695 0.520 4 55106807 missense variant T/A snv 0.22 0.20 25
rs9288516
XRCC5
0.827 0.120 2 216188541 intron variant T/A snv 5.0E-02 6
rs13181
KLC3 ; ERCC2
0.487 0.760 19 45351661 stop gained T/A;G snv 4.0E-06; 0.32 134
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113