Disease: Liver carcinoma
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs397507444
MTHFR
0.405 0.880 1 11794407 missense variant T/G snv 306
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 262
rs1799945
LOC108783645 ; HFE
0.452 0.760 6 26090951 missense variant C/G;T snv 0.11 0.10 226
rs1801133
MTHFR
0.472 0.880 1 11796321 missense variant G/A snv 0.31 0.27 174
rs671
ALDH2
0.529 0.840 12 111803962 missense variant G/A snv 1.9E-02 5.8E-03 116
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63 99
rs738409
PNPLA3
0.557 0.720 22 43928847 missense variant C/G snv 0.28 0.22 88
rs12979860
IFNL4
0.547 0.520 19 39248147 intron variant C/T snv 0.39 84
rs1229984
ADH1B
0.570 0.560 4 99318162 missense variant T/C;G snv 0.90 83
rs8099917 0.581 0.600 19 39252525 upstream gene variant T/G snv 0.16 60
rs58542926
TM6SF2
0.630 0.440 19 19268740 missense variant C/T snv 6.5E-02 5.8E-02 42
rs1137100
LEPR
0.627 0.640 1 65570758 missense variant A/G snv 0.30 0.25 39
rs1800206
PPARA
0.641 0.640 22 46218377 missense variant C/G snv 4.3E-02 4.2E-02 35
rs121912666
TP53
0.645 0.360 17 7674872 missense variant T/C;G snv 8.0E-06 34
rs12785878
NADSYN1
0.677 0.520 11 71456403 intron variant G/A;T snv 25
rs12980275 0.701 0.360 19 39241143 upstream gene variant A/G snv 0.36 23
rs641738
LOC112268246 ; TMC4 ; MBOAT7
0.689 0.320 19 54173068 missense variant T/A;C;G snv 22
rs72613567
HSD17B13
0.742 0.320 4 87310240 splice donor variant -/A delins 0.22 14
rs2228603
NCAN
0.790 0.360 19 19219115 missense variant C/A;T snv 2.8E-05; 5.9E-02 12
rs2896019
PNPLA3
0.790 0.160 22 43937814 intron variant T/G snv 0.20 10
rs3829251
NADSYN1
0.851 0.120 11 71483513 intron variant G/A snv 0.21 8
rs2854116
APOC3
0.807 0.200 11 116829453 upstream gene variant C/T snv 0.51 7
rs2143571
SAMM50
0.827 0.080 22 43995806 intron variant G/A snv 0.25 5
rs17007417 0.882 0.080 2 71808541 regulatory region variant T/C snv 0.85 3