DisGeNET - a database of gene-disease associations

List of associated variants

Nasopharyngeal carcinoma, C2931822

Source: ALL

Results per page

Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs5009448	HLA-A	1.000	0.120	6	29972711	upstream gene variant	T/C	snv		0.74	1
rs9260484	HLA-A	1.000	0.120	6	29952476	upstream gene variant	A/C	snv		0.62	1
rs9260734	HLA-A	1.000	0.120	6	29964889	intergenic variant	G/A	snv		0.22	1
rs232230	IGKC	1.000	0.120	2	88857435	missense variant	C/G	snv	0.14	0.17	1
rs1373589952	IL19 ; IL10	1.000	0.120	1	206772296	missense variant	G/A	snv		7.0E-06	1
rs169111	ITGA9	1.000	0.120	3	37474042	intron variant	C/T	snv		0.84	1
rs169188	ITGA9	1.000	0.120	3	37465958	intron variant	G/A	snv		7.6E-02	1
rs197757	ITGA9	1.000	0.120	3	37481337	intron variant	G/A	snv		0.14	1
rs2212020	ITGA9	1.000	0.120	3	37475971	intron variant	C/T	snv		0.34	1
rs2279244	KRR1 ; GLIPR1	1.000	0.120	12	75502884	3 prime UTR variant	C/T	snv		0.23	1
rs2074517	LIG3	1.000	0.120	17	34997659	non coding transcript exon variant	T/C	snv		2.1E-02	1
rs10496040	LOC105374662 ; RTN4	1.000	0.120	2	55080510	5 prime UTR variant	C/A	snv		9.1E-02	1
rs9418990	LOC107984284 ; CYP2E1	1.000	0.120	10	133524462	intron variant	C/T	snv		0.63	1
rs11865086	MAPK3	1.000	0.120	16	30119172	intron variant	C/A	snv		0.55	1
rs763077439	MDM2	1.000	0.120	12	68839350	missense variant	G/A	snv	5.2E-05	2.1E-05	1
rs13299349	MIR3152 ; ADAMTSL1	1.000	0.120	9	18573362	mature miRNA variant	G/A	snv	0.32	0.27	1
rs8078913	MIR4520-1 ; C17orf100 ; MIR4520-2	1.000	0.120	17	6655449	mature miRNA variant	C/G;T	snv	0.49		1
rs11237828	MIR5579 ; TENM4	1.000	0.120	11	79422176	mature miRNA variant	T/C	snv	0.12	0.22	1
rs371828436	MMP2	1.000	0.120	16	55489798	missense variant	G/A;T	snv	4.0E-06		1
rs780391868	MMP2	1.000	0.120	16	55491915	missense variant	G/A;C;T	snv	8.0E-06		1
rs8049883	MT1A	1.000	0.120	16	56639498	intron variant	G/A	snv		0.15	1
rs10163267	OSGIN1 ; MLYCD ; LOC105371371	1.000	0.120	16	83940313	intron variant	G/A;C	snv			1
rs2275531	PIGR	1.000	0.120	1	206935771	missense variant	C/G;T	snv	0.38		1
rs291102	PIGR	1.000	0.120	1	206933133	missense variant	G/A;C	snv	0.10		1
rs11158728	RAD51B	1.000	0.120	14	68295488	intron variant	G/A;C;T	snv			1