DisGeNET - a database of gene-disease associations

List of associated variants

Young onset Parkinson disease, C4275179

Source: ALL

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Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs34637584	LRRK2	0.583	0.480	12	40340400	missense variant	G/A	snv	5.3E-04	3.6E-04	78
rs104893877	SNCA	0.614	0.360	4	89828149	missense variant	C/T	snv			59
rs104893878	SNCA ; SNCA-AS1	0.732	0.160	4	89835580	missense variant	C/G	snv			21
rs34778348	LRRK2 ; LOC105369736	0.742	0.120	12	40363526	missense variant	G/A	snv	1.7E-03	5.8E-04	15
rs104893875	SNCA	0.742	0.120	4	89828170	missense variant	C/T	snv	4.0E-06		13
rs1064793345	PTEN	0.752	0.240	10	87961039	missense variant	T/C	snv			11
rs398122403	SYNJ1	0.807	0.080	21	32695106	missense variant	C/T	snv	1.2E-05		11
rs34424986	PRKN	0.752	0.200	6	161785820	missense variant	G/A;T	snv	1.9E-03; 8.0E-06		10
rs431905511	SNCA	0.827	0.080	4	89828154	missense variant	C/T	snv			9
rs774005786	PARK7	0.790	0.080	1	7970951	missense variant	G/A;T	snv	3.9E-04; 2.0E-05		8
rs28938172	PARK7	0.790	0.080	1	7984981	missense variant	T/C	snv			7
rs755588390	PRKN	0.851	0.160	6	162262672	missense variant	T/C;G	snv			7
rs74315351	PARK7	0.807	0.080	1	7962863	missense variant	G/A	snv			6
rs45539432	PINK1-AS ; PINK1	0.851	0.040	1	20649109	stop gained	C/T	snv	4.0E-05	3.5E-05	5
rs2281983	PITX3	0.851	0.080	10	102231624	missense variant	G/A;C;T	snv	0.62; 8.3E-06		4
rs4919621	PITX3	0.851	0.080	10	102238914	intron variant	A/T	snv		0.66	4
rs199935023	PLA2G6	0.882	0.040	22	38132917	missense variant	C/A;T	snv	4.9E-05; 3.6E-05		4
rs137853054	PRKN	0.882	0.160	6	161973317	missense variant	G/A;C;T	snv	3.7E-04; 4.0E-06; 8.0E-06		4
rs1801334	PRKN	0.851	0.040	6	161360193	missense variant	C/T	snv	2.5E-02	2.5E-02	4
rs3758549	GBF1	0.882	0.040	10	102244438	upstream gene variant	G/A	snv		0.14	3
rs74315360	PINK1	0.925	0.040	1	20638104	missense variant	C/A	snv			3
rs74315359	PINK1-AS ; PINK1	0.882	0.040	1	20644651	missense variant	C/T	snv	2.0E-05	1.4E-05	3
rs3738136	PINK1 ; PINK1-AS	0.882	0.040	1	20645618	missense variant	G/A	snv	9.2E-02	5.0E-02	3
rs150562946	PRKN	0.882	0.040	6	161785877	missense variant	G/A	snv	4.2E-04	4.5E-04	3
rs751037529	PRKN	0.925	0.040	6	161785793	missense variant	C/G	snv	1.2E-05		3