Disease: Parkinson Disease
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs34778348
LRRK2 ; LOC105369736
0.742 0.120 12 40363526 missense variant G/A snv 1.7E-03 5.8E-04 15
rs142444896
CHCHD2
0.807 0.120 7 56106409 missense variant G/A snv 9.3E-03 7.5E-03 6
rs4866
NUDT1
0.827 0.240 7 2249951 missense variant G/A snv 2.2E-02 1.8E-02 5
rs1801334
PRKN
0.851 0.040 6 161360193 missense variant C/T snv 2.5E-02 2.5E-02 4
rs6783485
LOC105377110
0.925 0.040 3 59442071 intron variant G/A snv 5.1E-02 2
rs1801474
PRKN
0.851 0.080 6 162201165 missense variant C/T snv 7.1E-02 5.3E-02 4
rs1879553 0.925 0.040 3 118896616 downstream gene variant A/G snv 7.3E-02 2
rs11186
COL5A2
0.925 0.040 2 189032668 3 prime UTR variant A/C snv 9.4E-02 2
rs1559085
CAST
0.925 0.040 5 96742998 intron variant A/G snv 9.4E-02 2
rs66737902
LOC105369736 ; LRRK2
0.925 0.040 12 40367861 3 prime UTR variant T/C snv 0.14 2
rs7669
MTIF3 ; GTF3A
0.925 0.040 13 27435714 missense variant G/A;C snv 0.15 0.15 2
rs5030732
UCHL1 ; UCHL1-AS1
0.790 0.160 4 41257616 missense variant C/A snv 0.24 0.16 10
rs1052133
OGG1 ; CAMK1
0.476 0.800 3 9757089 missense variant C/G snv 0.27 0.22 147
rs9323124
RPA2P1 ; MDGA2
0.925 0.040 14 46996974 non coding transcript exon variant T/A snv 0.23 2
rs1801133
MTHFR
0.472 0.880 1 11796321 missense variant G/A snv 0.31 0.27 174
rs9652490
LINGO1
0.851 0.080 15 77671545 intron variant A/G snv 0.28 4
rs11868035
RAI1 ; SREBF1
0.763 0.200 17 17811787 splice region variant G/A snv 0.45 0.33 14
rs6812193
FAM47E-STBD1 ; FAM47E ; LOC105377286
0.882 0.080 4 76277833 intron variant C/T snv 0.38 3
rs10746953 0.925 0.040 9 74302924 regulatory region variant C/T snv 0.44 2
rs4880
SOD2
0.500 0.840 6 159692840 missense variant A/G snv 0.48 0.47 131
rs356219
LOC105377329 ; SNCA
0.776 0.240 4 89716450 intron variant G/A snv 0.54 9
rs3129882
HLA-DRA
0.807 0.240 6 32441753 intron variant G/A snv 0.56 6
rs10788972
TCEANC2
0.925 0.040 1 54106570 intron variant C/A snv 0.57 2
rs947211
LOC105371702
0.925 0.040 1 205783537 non coding transcript exon variant A/G snv 0.64 3
rs356182
LOC105377329 ; SNCA
0.882 0.080 4 89704960 intron variant G/A snv 0.65 3