Disease: Stage IIA Gallbladder Cancer AJCC v8
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs4595552 0.790 0.080 11 125865825 intergenic variant C/G;T snv 7
rs11887534
ABCG5 ; ABCG8
0.653 0.440 2 43839108 missense variant G/A;C snv 6.4E-06; 6.7E-02 29
rs1157
ALCAM
0.790 0.080 3 105576617 3 prime UTR variant G/A snv 0.16 7
rs13959
ALDH1A1
0.790 0.080 9 72930966 synonymous variant G/A snv 0.48 0.42 7
rs11954856
APC
0.732 0.200 5 112751630 intron variant T/G snv 0.54 12
rs4791171
AXIN2
0.763 0.080 17 65545379 intron variant T/C snv 0.55 11
rs1800469
B9D2 ; TGFB1
0.547 0.760 19 41354391 intron variant A/G snv 0.69 78
rs3834129
CASP8
0.627 0.560 2 201232809 upstream gene variant AGTAAG/- del 0.48 38
rs2486758
CYP17A1
0.742 0.160 10 102837723 upstream gene variant T/C snv 0.18 11
rs743572
CYP17A1
0.672 0.360 10 102837395 5 prime UTR variant A/G;T snv 0.40; 8.1E-06 24
rs1048943
CYP1A1
0.533 0.720 15 74720644 missense variant T/A;C;G snv 0.11 5.9E-02 88
rs3808607
CYP7A1
0.716 0.400 8 58500365 upstream gene variant G/T snv 0.55 16
rs3824260
CYP7A1
0.742 0.160 8 58500631 upstream gene variant A/G;T snv 11
rs4444903
EGF
0.630 0.360 4 109912954 5 prime UTR variant A/G snv 0.51 35
rs1126497
EPCAM
0.716 0.200 2 47373967 missense variant T/C snv 0.51 0.58 14
rs2234767
FAS ; ACTA2
0.649 0.280 10 88989499 intron variant G/A;T snv 0.15 30
rs763110
FASLG
0.653 0.560 1 172658358 upstream gene variant C/T snv 0.49 30
rs1444424830
FASTK
0.790 0.080 7 151078923 missense variant C/T snv 4.6E-06 7.0E-06 7
rs11614913
HOXC6 ; MIR196A2
0.512 0.760 12 53991815 mature miRNA variant C/T snv 0.39 0.34 111
rs61764370
KRAS
0.662 0.320 12 25207290 3 prime UTR variant A/C snv 6.2E-02 29
rs909629195
LASP1 ; MIR6779
0.790 0.080 17 38914448 missense variant C/T snv 7
rs2910164
MIR3142HG ; MIR146A
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70 193
rs3746444
MIR499A ; MIR499B ; MYH7B ; LOC107985393
0.514 0.760 20 34990448 mature miRNA variant A/G snv 0.20 0.19 105
rs2303426
MSH2
0.790 0.080 2 47403411 intron variant C/A;G;T snv 1.9E-05; 0.47 8
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614