LTA, lymphotoxin alpha, 4049

N. diseases: 353; N. variants: 26
Source: ALL
Variant DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Disease Class Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs1799964
rs1799964
0.608 0.760 6 31574531 upstream gene variant T/C snv 0.19
CUI: C0010346
Disease: Crohn Disease
Crohn Disease
Digestive System Diseases 0.800 1.000 1 2010 2010
dbSNP: rs1800630
rs1800630
0.701 0.480 6 31574699 upstream gene variant C/A snv 0.14
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis
Skin and Connective Tissue Diseases; Musculoskeletal Diseases; Immune System Diseases 0.720 0.667 3 2011 2019
dbSNP: rs1041981
rs1041981
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
CUI: C0027051
Disease: Myocardial Infarction
Myocardial Infarction
Pathological Conditions, Signs and Symptoms; Cardiovascular Diseases 0.720 1.000 2 2005 2007
dbSNP: rs2239704
rs2239704
0.732 0.320 6 31572364 5 prime UTR variant A/C snv 0.64
CUI: C0302592
Disease: Cervix carcinoma
Cervix carcinoma
Neoplasms; Female Urogenital Diseases and Pregnancy Complications 0.710 1.000 2 2014 2017
dbSNP: rs2844484
rs2844484
0.807 0.320 6 31568447 upstream gene variant A/G snv 0.64
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis
Skin and Connective Tissue Diseases; Musculoskeletal Diseases; Immune System Diseases 0.700 1.000 2 2007 2009
dbSNP: rs1041981
rs1041981
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
Diabetes Mellitus, Insulin-Dependent
Nutritional and Metabolic Diseases; Immune System Diseases; Endocrine System Diseases 0.700 1.000 1 2007 2007
dbSNP: rs1041981
rs1041981
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic
Skin and Connective Tissue Diseases; Immune System Diseases 0.700 1.000 1 2014 2014
dbSNP: rs190775951
rs190775951
6 31567356 upstream gene variant G/A snv
CUI: C2985280
Disease: Blood Protein Measurement
Blood Protein Measurement
0.700 1.000 1 2018 2018
dbSNP: rs2009658
rs2009658
0.882 0.160 6 31570467 upstream gene variant C/G snv 0.15
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis
Skin and Connective Tissue Diseases; Musculoskeletal Diseases; Immune System Diseases 0.700 1.000 1 2011 2011
dbSNP: rs2071590
rs2071590
1.000 0.040 6 31571991 upstream gene variant A/G snv 0.69
CUI: C0596887
Disease: mathematical ability
mathematical ability
0.700 1.000 1 2018 2018
dbSNP: rs2229094
rs2229094
0.776 0.320 6 31572779 missense variant T/C snv 0.27 0.27
CUI: C0200635
Disease: Lymphocyte Count measurement
Lymphocyte Count measurement
0.700 1.000 1 2016 2016
dbSNP: rs2229094
rs2229094
0.776 0.320 6 31572779 missense variant T/C snv 0.27 0.27
CUI: C0023508
Disease: White Blood Cell Count procedure
White Blood Cell Count procedure
0.700 1.000 1 2016 2016
dbSNP: rs2516390
rs2516390
1.000 0.120 6 31562106 downstream gene variant C/G;T snv
Diabetes Mellitus, Insulin-Dependent
Nutritional and Metabolic Diseases; Immune System Diseases; Endocrine System Diseases 0.700 1.000 1 2007 2007
dbSNP: rs2516392
rs2516392
1.000 0.040 6 31561557 downstream gene variant C/G;T snv
CUI: C0149745
Disease: Oral Ulcer
Oral Ulcer
Stomatognathic Diseases 0.700 1.000 1 2019 2019
dbSNP: rs2844482
rs2844482
0.882 0.200 6 31571990 upstream gene variant C/T snv 0.15
CUI: C0004096
Disease: Asthma
Asthma
Respiratory Tract Diseases; Immune System Diseases 0.700 1.000 1 2019 2019
dbSNP: rs2844482
rs2844482
0.882 0.200 6 31571990 upstream gene variant C/T snv 0.15
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis
Skin and Connective Tissue Diseases; Musculoskeletal Diseases; Immune System Diseases 0.700 1.000 1 2011 2011
dbSNP: rs2844484
rs2844484
0.807 0.320 6 31568447 upstream gene variant A/G snv 0.64
Diabetes Mellitus, Insulin-Dependent
Nutritional and Metabolic Diseases; Immune System Diseases; Endocrine System Diseases 0.700 1.000 1 2007 2007
dbSNP: rs28732143
rs28732143
6 31563033 downstream gene variant G/A;C snv
CUI: C2985280
Disease: Blood Protein Measurement
Blood Protein Measurement
0.700 1.000 1 2018 2018
dbSNP: rs3093539
rs3093539
1.000 0.080 6 31570500 upstream gene variant G/A;T snv 1.6E-02
CUI: C0004096
Disease: Asthma
Asthma
Respiratory Tract Diseases; Immune System Diseases 0.700 1.000 1 2019 2019
dbSNP: rs928815
rs928815
1.000 0.120 6 31563438 downstream gene variant T/G snv 0.65
Diabetes Mellitus, Insulin-Dependent
Nutritional and Metabolic Diseases; Immune System Diseases; Endocrine System Diseases 0.700 1.000 1 2007 2007
dbSNP: rs1799724
rs1799724
0.600 0.680 6 31574705 upstream gene variant C/T snv 8.5E-02
VASCULAR DEMENTIA, SUSCEPTIBILITY TO
0.700 0
dbSNP: rs1799724
rs1799724
0.600 0.680 6 31574705 upstream gene variant C/T snv 8.5E-02
ALZHEIMER DISEASE, SUSCEPTIBILITY TO
0.700 0
dbSNP: rs2239704
rs2239704
0.732 0.320 6 31572364 5 prime UTR variant A/C snv 0.64
LEPROSY, EARLY-ONSET, SUSCEPTIBILITY TO
0.700 0
dbSNP: rs909253
rs909253
0.641 0.600 6 31572536 intron variant A/G;T snv
PSORIATIC ARTHRITIS, SUSCEPTIBILITY TO (finding)
0.700 0
dbSNP: rs909253
rs909253
0.641 0.600 6 31572536 intron variant A/G;T snv
CUI: C0027051
Disease: Myocardial Infarction
Myocardial Infarction
Pathological Conditions, Signs and Symptoms; Cardiovascular Diseases 0.700 0