Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1168879812
rs1168879812
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0392525
Disease:
Nephrolithiasis
0.010 GeneticVariation BEFREE Focusing our analysis on coding sequence variants in 63 genes with preferential kidney expression we identify two rare missense variants SLC34A1 p.Tyr489Cys (OR=2.38, P=2.8 × 10(-5)) and TRPV5 p.Leu530Arg (OR=3.62, P=4.1 × 10(-5)) associating with recurrent kidney stones. 26272126 2015
dbSNP: rs1168879812
rs1168879812
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0022650
Disease:
Kidney Calculi
0.010 GeneticVariation BEFREE Focusing our analysis on coding sequence variants in 63 genes with preferential kidney expression we identify two rare missense variants SLC34A1 p.Tyr489Cys (OR=2.38, P=2.8 × 10(-5)) and TRPV5 p.Leu530Arg (OR=3.62, P=4.1 × 10(-5)) associating with recurrent kidney stones. 26272126 2015
dbSNP: rs121918015
rs121918015
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0520739
Disease:
Hereditary pyropoikilocytosis
0.010 GeneticVariation BEFREE A point mutation (c.323C>T) in the ALPL gene leading to a proline to leucine substitution at position 108 of TNSALP was first reported in a patient diagnosed with odonto-HPP (M Herasse et al., J Med Genet 2003;40:605-609), although the effects of this mutation on the TNSALP molecule have not been elucidated. 25982064 2015
dbSNP: rs149889416
rs149889416
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0041948
Disease:
Uremia
0.010 GeneticVariation BEFREE In vitro testing showed that one mutation, T117H, produced an ALP protein with almost no enzyme activity; the second, G438S, produced a protein with normal activity, but its activity was inhibited by raising the media phosphate concentration, suggesting that phosphate retention (attributable to uremia) could have contributed to the phenotypic change, although a pathogenic effect of bisphosphonate treatment is also likely. 25736332 2015
dbSNP: rs786204530
rs786204530
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0041948
Disease:
Uremia
0.010 GeneticVariation BEFREE In vitro testing showed that one mutation, T117H, produced an ALP protein with almost no enzyme activity; the second, G438S, produced a protein with normal activity, but its activity was inhibited by raising the media phosphate concentration, suggesting that phosphate retention (attributable to uremia) could have contributed to the phenotypic change, although a pathogenic effect of bisphosphonate treatment is also likely. 25736332 2015
dbSNP: rs121918010
rs121918010
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0013336
Disease:
Dwarfism
0.010 GeneticVariation BEFREE Patients with the p.F327L compound heterozygous mutation had the different non-lethal type with short stature and a gradual improvement in ALP level and bone mineralisation. 24276437 2014
dbSNP: rs1780329
rs1780329
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0033847
Disease:
Pseudoxanthoma Elasticum
0.010 GeneticVariation BEFREE The SNV c.1190-65C>A (rs1780329, minor allele frequency (MAF) patients: 0.17; controls: 0.11; P=0.04) in the ALP gene was significantly more frequent in PXE patients. 25025693 2014
dbSNP: rs121918014
rs121918014
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0520739
Disease:
Hereditary pyropoikilocytosis
0.010 GeneticVariation BEFREE A point mutation (c.1250A>G), which leads to replacement of an asparagine at position 417 of TNSALP with serine [TNSALP (N417S)], has been reported in a patient diagnosed with perinatal HPP (Sergi C. et al.Am, J. Med.Genet.103, 235-240, 2001). 23688511 2013
dbSNP: rs200621180
rs200621180
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C1840322
Disease:
ODONTOHYPOPHOSPHATASIA (disorder)
0.010 GeneticVariation BEFREE Nevertheless, the probands (compound heterozygous: p.[N440del];[R152C]) feature early-onset and severe odonto-HPP phenotype, whereas the father (p.[N440del];[=]) has only moderate symptoms, suggesting p.R152C may contribute or predispose to a more severe dental phenotype in combination with the deletion. 23791648 2013
dbSNP: rs1436960562
rs1436960562
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0020630
Disease:
Hypophosphatasia
0.010 GeneticVariation BEFREE Our study shows that the novel de novo splicing mutation c.298-1G>A in intron 4 and the missense mutation c.1271T>C in exon 11 of the ALPL gene are responsible for hypophosphatasia in some Chinese patients. 22300680 2012
dbSNP: rs768053120
rs768053120
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0520739
Disease:
Hereditary pyropoikilocytosis
0.010 GeneticVariation BEFREE Missense mutations at position 420 of TNSALP (standard nomenclature), which convert glycine to serine [TNSALP (G420S)] or alanine [TNSALP (G420A)], have been reported in perinatal and childhood HPP, respectively. 23039266 2012
dbSNP: rs1780329
rs1780329
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0038013
Disease:
Ankylosing spondylitis
0.010 GeneticVariation BEFREE Our results indicate that the TNAP haplotype rs3767155 (G)/rs3738099 (G)/rs1780329 (T) is a novel genetic marker in men that is significantly associated with AS in multiplex families containing affected individuals of both sexes. 17195227 2007
dbSNP: rs3738099
rs3738099
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0038013
Disease:
Ankylosing spondylitis
0.010 GeneticVariation BEFREE Our results indicate that the TNAP haplotype rs3767155 (G)/rs3738099 (G)/rs1780329 (T) is a novel genetic marker in men that is significantly associated with AS in multiplex families containing affected individuals of both sexes. 17195227 2007
dbSNP: rs3767155
rs3767155
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0038013
Disease:
Ankylosing spondylitis
0.010 GeneticVariation BEFREE Our results indicate that the TNAP haplotype rs3767155 (G)/rs3738099 (G)/rs1780329 (T) is a novel genetic marker in men that is significantly associated with AS in multiplex families containing affected individuals of both sexes. 17195227 2007
dbSNP: rs138690664
rs138690664
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0020630
Disease:
Hypophosphatasia
0.010 GeneticVariation BEFREE Thus, loss of function resulting from the interchain disulfide bridge is the molecular basis for the lethal hypophosphatasia associated with TNSALP(R433C). 17212778 2006
dbSNP: rs138690664
rs138690664
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0520739
Disease:
Hereditary pyropoikilocytosis
0.010 GeneticVariation BEFREE Homozygosity for TNSALP missense mutation 1348C>T (Arg433Cys) accounted for this kindred's infantile HPP. 16769381 2006
dbSNP: rs138690664
rs138690664
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0268412
Disease:
Infantile hypophosphatasia
0.010 GeneticVariation BEFREE Homozygosity for TNSALP mutation 1348c>T (Arg433Cys) causes infantile hypophosphatasia manifesting transient disease correction and variably lethal outcome in a kindred of black ancestry. 16769381 2006
dbSNP: rs150799088
rs150799088
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0020630
Disease:
Hypophosphatasia
0.010 GeneticVariation BEFREE Substitution of an arginine at position 433 with a histidine [TNSALP(R433H)] or a cysteine [TNSALP(R433C)] was reported in patients diagnosed with the mild or severe form of hypophosphatasia, respectively. 17212778 2006
dbSNP: rs762915678
rs762915678
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0268412
Disease:
Infantile hypophosphatasia
0.010 GeneticVariation BEFREE Especially, A115V located in exon 5 has been detected in a Japanese patient with severe periodontitis and adult-type HOPS. 15629439 2005
dbSNP: rs762915678
rs762915678
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0268413
Disease:
Adult hypophosphatasia (disorder)
0.010 GeneticVariation BEFREE This study indicated that the mutant (A115V) TNSALP gene produced the defective ALP enzyme and it could be recessively transmitted and be a disease-causing mutation of the adult-type hypophosphatasia. 15629439 2005
dbSNP: rs762915678
rs762915678
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C4025886
Disease:
Severe periodontitis
0.010 GeneticVariation BEFREE Especially, A115V located in exon 5 has been detected in a Japanese patient with severe periodontitis and adult-type HOPS. 15629439 2005
dbSNP: rs1054159992
rs1054159992
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0020630
Disease:
Hypophosphatasia
0.010 GeneticVariation BEFREE Function of mutant (G1144A) tissue-nonspecific ALP gene from hypophosphatasia. 12412800 2002
dbSNP: rs150594290
rs150594290
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C4048158
Disease:
Convulsions
0.010 GeneticVariation BEFREE Glu274Lys/Gly309Arg mutation of the tissue-nonspecific alkaline phosphatase gene in neonatal hypophosphatasia associated with convulsions. 11999978 2002
dbSNP: rs150594290
rs150594290
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0020630
Disease:
Hypophosphatasia
0.010 GeneticVariation BEFREE Glu274Lys/Gly309Arg mutation of the tissue-nonspecific alkaline phosphatase gene in neonatal hypophosphatasia associated with convulsions. 11999978 2002
dbSNP: rs150594290
rs150594290
Entrez Id: 249
Gene Symbol: ALPL
ALPL
CUI: C0036572
Disease:
Seizures
0.010 GeneticVariation BEFREE Phenotype/genotype correlation indicates that G309R is a deleterious mutation that can lead to seizures and a lethal outcome, as was demonstrated in our patient. 11999978 2002