Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C2239176
Disease:
Liver carcinoma
0.050 GeneticVariation BEFREE Neither was the association between the MALAT-1 SNPs and progression factors of HCC, including TNM staging, metastasis, and cancer embolus; Overall, this study suggested that tagSNPs rs11227209, rs619586, and rs3200401 at MALAT-1 were not significantly associated with HCC susceptibility. 31350456 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C2239176
Disease:
Liver carcinoma
0.050 GeneticVariation BEFREE A stratified analysis showed that younger patients (<55 years) with the MALAT1 rs619586 G allele had a decreased risk of HCC under a codominant model (AOR = 0.289, 95% CI: 0.108-0.773, p = 0.013) and dominant model (AOR = 0.286, 95% CI: 0.107-0.765, p = 0.013). 31500187 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C2239176
Disease:
Liver carcinoma
0.050 GeneticVariation BEFREE In the present study, SNPs rs7763881 in HULC and rs619586 in MALAT1 were genotyped in 70 HBV-positive HCC, 70 HBV patients, and 70 healthy controls in Egyptian population and the level of serum lncRNA-AF085935 and lncRNA-uc003wbd of all the subjects was assayed by quantitative real-time polymerase chain reaction. 31009106 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C2239176
Disease:
Liver carcinoma
0.050 GeneticVariation BEFREE In addition, the two-way interaction of <i>HOTTIP</i> rs17501292-<i>MALAT1</i> rs619586 polymorphisms showed a decreased effect on HCC risk (<i>P</i><sub>interaction</sub> = 0.028, OR = 0.30) and epistasis with each other. 29930469 2018
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C2239176
Disease:
Liver carcinoma
0.050 GeneticVariation BEFREE Furthermore, the variant genotypes of rs619586 was associated with decreased HCC risk with a borderline significance (AG/GG vs. AA: adjusted OR  =  0.81, 95% CIs  =  0.65-1.01, P  =  0.057). 22493738 2012
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C0027051
Disease:
Myocardial Infarction
0.010 GeneticVariation BEFREE Taken together, this study provides additional evidence that genetic variation of the ANRIL rs9632884 and MALAT1 rs3200401 can mediate lipid levels in MI patients. 30898706 2020
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C1337013
Disease:
Differentiated Thyroid Gland Carcinoma
0.010 GeneticVariation BEFREE Our study indicated that miR-214 inhibited MALAT1 expression by directly binding to the G allele of MALAT1 rs619586 polymorphism, thus inhibiting CTNNB1 expression and promoting cell proliferation in the pathogenesis of DTC. 31456244 2020
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C2239176
Disease:
Liver carcinoma
0.010 GeneticVariation BEFREE Neither was the association between the MALAT-1 SNPs and progression factors of HCC, including TNM staging, metastasis, and cancer embolus; Overall, this study suggested that tagSNPs rs11227209, rs619586, and rs3200401 at MALAT-1 were not significantly associated with HCC susceptibility. 31350456 2019
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C0026769
Disease:
Multiple Sclerosis
0.010 GeneticVariation BEFREE Moreover, the A T haplotype (rs619586 and rs3200401, respectively) within <i>MALAT1</i> was associated with MS risk. 30822187 2019
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C0279626
Disease:
Squamous cell carcinoma of esophagus
0.010 GeneticVariation BEFREE Taken together, our findings proposed that polymorphism rs3200401 C > T in MALAT1 gene is associated with increased risk of ESCC. 31040692 2019
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C0019163
Disease:
Hepatitis B
0.010 GeneticVariation BEFREE Under the dominant model, smokers with the MALAT1 rs3200401 CT + TT genotype had a higher frequency of hepatitis B virus (HBV) infection (p = 0.034). 31500187 2019
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C0151779
Disease:
Cutaneous Melanoma
0.010 GeneticVariation BEFREE In conclusion, our results suggest that there is no contribution of MALAT1 rs3200401 and rs619586 polymorphisms or polymorphisms in the core promoter that could be associated with the risk of melanoma skin cancer in this specific study setting. 30870271 2019
dbSNP: rs4102217
rs4102217
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C1956346
Disease:
Coronary Artery Disease
0.010 GeneticVariation BEFREE <b>Conclusion:</b> Our study demonstrated that the GC genotype and the recessive model of rs4102217 potentially increased CAD risk in some specific group. 30833365 2019
dbSNP: rs591291
rs591291
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C0014175
Disease:
Endometriosis
0.010 GeneticVariation BEFREE The MALAT1 rs591291 C > T polymorphism was associated with a significant increase in endometriosis risk. 31803924 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C1956346
Disease:
Coronary Artery Disease
0.010 GeneticVariation BEFREE Smokers with MALAT1 rs619586 AA genotype (OR: 2.20, 95% CI = 1.57-3.07) and GG+AG genotype (OR: 2.11, 95% CI = 1.17-3.81) had a higher risk of CAD. 30833365 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C0026769
Disease:
Multiple Sclerosis
0.010 GeneticVariation BEFREE Moreover, the A T haplotype (rs619586 and rs3200401, respectively) within <i>MALAT1</i> was associated with MS risk. 30822187 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C4552766
Disease:
Miscarriage
0.010 GeneticVariation BEFREE In conclusion, our study suggests that the rs619586 G variant may have potential protective effects conferring a decreased risk of recurrent miscarriage in the southern Chinese population. 31024342 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C0279626
Disease:
Squamous cell carcinoma of esophagus
0.010 GeneticVariation BEFREE Since the association between rs619586 A > G polymorphism and ESCC risk was not significant after FDR adjustment, there was a minor possibility that rs619586 A > G might be a protective factor for ESCC. 31040692 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C0151779
Disease:
Cutaneous Melanoma
0.010 GeneticVariation BEFREE In conclusion, our results suggest that there is no contribution of MALAT1 rs3200401 and rs619586 polymorphisms or polymorphisms in the core promoter that could be associated with the risk of melanoma skin cancer in this specific study setting. 30870271 2019
dbSNP: rs619586
rs619586
Entrez Id: 378938
Gene Symbol: MALAT1
MALAT1
CUI: C0238463
Disease:
Papillary thyroid carcinoma
0.010 GeneticVariation BEFREE <b>Conclusions:</b> Our findings su</span>ggested that MALAT1 SNP rs619586 could serve as a potential indicator for PTC susceptibility and pathogenesis. 31788131 2019
dbSNP: rs664589
rs664589
Entrez Id: 378938;109136579
Gene Symbol: MALAT1;TALAM1
MALAT1;TALAM1
CUI: C0009402
Disease:
Colorectal Carcinoma
0.010 GeneticVariation BEFREE <i>In vitro</i> and <i>in vivo</i> experiments showed that the rs664589 C to G mutation facilitated carcinogenesis and metastasis of colorectal cancer. 31311811 2019
dbSNP: rs664589
rs664589
Entrez Id: 378938;109136579
Gene Symbol: MALAT1;TALAM1
MALAT1;TALAM1
CUI: C0596263
Disease:
Carcinogenesis
0.010 GeneticVariation BEFREE <i>In vitro</i> and <i>in vivo</i> experiments showed that the rs664589 C to G mutation facilitated carcinogenesis and metastasis of colorectal cancer. 31311811 2019
dbSNP: rs664589
rs664589
Entrez Id: 378938;109136579
Gene Symbol: MALAT1;TALAM1
MALAT1;TALAM1
CUI: C4722085
Disease:
Malignant neoplasm of colon and/or rectum
0.010 GeneticVariation BEFREE <i>In vitro</i> and <i>in vivo</i> experiments showed that the rs664589 C to G mutation facilitated carcinogenesis and metastasis of colorectal cancer. 31311811 2019
dbSNP: rs664589
rs664589
Entrez Id: 378938;109136579
Gene Symbol: MALAT1;TALAM1
MALAT1;TALAM1
CUI: C0027627
Disease:
Neoplasm Metastasis
0.010 GeneticVariation BEFREE <i>In vitro</i> and <i>in vivo</i> experiments showed that the rs664589 C to G mutation facilitated carcinogenesis and metastasis of colorectal cancer. 31311811 2019
dbSNP: rs3200401
rs3200401
Entrez Id: 378938;109136578;109136579
Gene Symbol: MALAT1;MASCRNA;TALAM1
MALAT1;MASCRNA;TALAM1
CUI: C0006142
Disease:
Malignant neoplasm of breast
0.010 GeneticVariation BEFREE In addition, females with genotype CT of rs3200401 had a lower risk of BC in the codominant model (OR: 0.75, 95%CI: 0.559-1.007) and over-dominant model (OR: 0.741, 95%CI: 0.552-0.993). 29146194 2018