Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs7587026
rs7587026
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C4749367
Disease:
Mesial temporal lobe epilepsy with hippocampal sclerosis
0.810 GeneticVariation BEFREE Meta-analysis revealed a genome-wide significant association for mesial temporal lobe epilepsy with hippocampal sclerosis with febrile seizures at the sodium channel gene cluster on chromosome 2q24.3 [rs7587026, within an intron of the SCN1A gene, P = 3.36 × 10(-9), odds ratio (A) = 1.42, 95% confidence interval: 1.26-1.59]. 24014518 2013
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0014544
Disease:
Epilepsy
0.060 GeneticVariation BEFREE In conclusion, our results suggest that SCN1A rs3</span>812718 polymorphism is associated with the risk of epilepsy. 29605548 2018
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0014544
Disease:
Epilepsy
0.060 GeneticVariation BEFREE The strongest association with epilepsy was rs3812718, or SCN1A IVS5N+5G>A: odds ratio (OR) = 0.85 for allele G (p = 0.0009) and 0.73 for genotype GG versus AA (p = 0.003). 24337656 2014
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0014544
Disease:
Epilepsy
0.060 GeneticVariation BEFREE SCN1A rs3812718 polymorphism and susceptibility to epilepsy with febrile seizures: a meta-analysis. 24076350 2014
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0014544
Disease:
Epilepsy
0.060 GeneticVariation BEFREE Interaction between rs12912233-rs880626 and rs3812718 was associated with the epilepsy risk in the subjects overall (p=0.001). 25668517 2015
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0014544
Disease:
Epilepsy
0.060 GeneticVariation BEFREE Association between SCN1A polymorphism rs3812718 and valproic acid resistance in epilepsy children: a case-control study and meta-analysis. 30413604 2018
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0014544
Disease:
Epilepsy
0.060 GeneticVariation BEFREE A common SCN1A IVS5-91G>A (rs3812718) allele has been attributed to be a possible modifying factor for epilepsy susceptibility and therapeutic response. 23466530 2013
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0036572
Disease:
Seizures
0.040 GeneticVariation BEFREE We used a R1648H knock-in mouse model (Scn1a<sup>RH/+</sup>) with mild/asymptomatic phenotype to dissociate the effects of seizures and of the mutation per se. 30659983 2019
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0036572
Disease:
Seizures
0.040 GeneticVariation BEFREE Knock-in mice heterozygous for the R1648H mutation (Scn1a(RH/+)) have decreased thresholds to induced seizures and infrequent spontaneous seizures, whereas homozygotes display spontaneous seizures and premature lethality. 21156207 2011
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0036572
Disease:
Seizures
0.040 GeneticVariation BEFREE To test this hypothesis, we subjected 21-23-day-old mice expressing the human SCN1A GEFS+ mutation R1648H to prolonged hyperthermia, and then examined seizure and behavioral phenotypes during adulthood. 28373025 2017
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0036572
Disease:
Seizures
0.040 GeneticVariation BEFREE We also examined seizure susceptibility in Cnr2 mutants harboring the human SCN1A R1648H (RH) epilepsy mutation and performed Electroencephalography (EEG) analysis to determine whether the loss of CB2Rs would increase spontaneous seizure frequency in Scn1a RH mutant mice. 31758544 2019
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0014544
Disease:
Epilepsy
0.030 GeneticVariation BEFREE Here, we present a multisystem analysis of an SCN1A mouse model carrying the NaV1.1-R1648H mutation, which causes febrile seizures and epilepsy in humans. 25378155 2014
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0014544
Disease:
Epilepsy
0.030 GeneticVariation BEFREE Our results demonstrate that variants in Scn2a, Kcnq2, and Scn8a can dramatically influence the phenotype of mice carrying the Scn1a-R1648H mutation and suggest that ion channel variants may contribute to the clinical variation seen in patients with monogenic epilepsy. 21156207 2011
dbSNP: rs121918622
rs121918622
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0014544
Disease:
Epilepsy
0.030 GeneticVariation BEFREE We also examined seizure susceptibility in Cnr2 mutants harboring the human SCN1A R1648H (RH) epilepsy mutation and performed Electroencephalography (EEG) analysis to determine whether the loss of CB2Rs would increase spontaneous seizure frequency in Scn1a RH mutant mice. 31758544 2019
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0009952
Disease:
Febrile Convulsions
0.030 GeneticVariation BEFREE Arecent study in Caucasians found an association between the single nucleotide polymorphism (SNP) of SCN1A, IVS5N +5 G>A (rs3812718), and febrile seizures (FS). 20477842 2010
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0009952
Disease:
Febrile Convulsions
0.030 GeneticVariation BEFREE We conclude that in the population studied, although rs3812718 polymorphism increases the susceptibility to MTLE-HS, this is not by increasing the susceptibility to FS. 22578703 2012
dbSNP: rs3812718
rs3812718
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0009952
Disease:
Febrile Convulsions
0.030 GeneticVariation BEFREE SCN1A rs3812718 polymorphism and susceptibility to epilepsy with febrile seizures: a meta-analysis. 24076350 2014
dbSNP: rs794726759
rs794726759
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0751122
Disease:
Infantile Severe Myoclonic Epilepsy
0.030 GeneticVariation BEFREE An inherited nonsense R1645X mutation in neuronal sodium channel alpha1-subunit gene in a Turkish patient with severe myoclonic epilepsy of infancy. 19809937 2009
dbSNP: rs794726759
rs794726759
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0751122
Disease:
Infantile Severe Myoclonic Epilepsy
0.030 GeneticVariation BEFREE As an in vitro model of this disease, we previously generated an induced pluripotent stem cell (iPSC) line from a patient with DS carrying a c.4933C>T (p.R1645*) substitution in SCN1A. 29453127 2018
dbSNP: rs794726759
rs794726759
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C0751122
Disease:
Infantile Severe Myoclonic Epilepsy
0.030 GeneticVariation BEFREE We generated iPSCs from a Dravet syndrome patient with a c.4933C>T substitution in SCN1A, which is predicted to result in truncation in the fourth homologous domain of the protein (p.R1645*). 23639079 2013
dbSNP: rs121917984
rs121917984
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0751122
Disease:
Infantile Severe Myoclonic Epilepsy
0.020 GeneticVariation BEFREE This "functional dominant negative" interaction would produce a more profound disinhibition than seen with haploinsufficiency that is typical of Dravet syndrome and could readily explain the more severe phenotype of patients with T226M mutation.Ann Neurol 2019;85:514-525. 30779207 2019
dbSNP: rs121917984
rs121917984
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C0751122
Disease:
Infantile Severe Myoclonic Epilepsy
0.020 GeneticVariation BEFREE This "functional dominant negative" interaction would produce a more profound disinhibition than seen with haploinsufficiency that is typical of Dravet syndrome and could readily explain the more severe phenotype of patients with T226M mutation. 31257984 2020
dbSNP: rs121917984
rs121917984
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C1839333
Disease:
EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 2
0.020 GeneticVariation BEFREE This "functional dominant negative" interaction would produce a more profound disinhibition than seen with haploinsufficiency that is typical of Dravet syndrome and could readily explain the more severe phenotype of patients with T226M mutation.Ann Neurol 2019;85:514-525. 30779207 2019
dbSNP: rs121917984
rs121917984
Entrez Id: 6323;101929680
Gene Symbol: SCN1A;SCN1A-AS1
SCN1A;SCN1A-AS1
CUI: C1839333
Disease:
EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 2
0.020 GeneticVariation BEFREE This "functional dominant negative" interaction would produce a more profound disinhibition than seen with haploinsufficiency that is typical of Dravet syndrome and could readily explain the more severe phenotype of patients with T226M mutation. 31257984 2020
dbSNP: rs121918628
rs121918628
Entrez Id: 6323;101929680;102724058
Gene Symbol: SCN1A;SCN1A-AS1;LOC102724058
SCN1A;SCN1A-AS1;LOC102724058
CUI: C1832884
Disease:
Hemiplegic migraine, familial type 1
0.020 GeneticVariation BEFREE We studied the FHM mutation Q1489K by transfecting tsA-201 cells and cultured neurons with human Na(v)1.1. 18632931 2008