SGCD, sarcoglycan delta, 6444

N. diseases: 68; N. variants: 35
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs121909297
rs121909297
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C1832525
Disease:
Limb-girdle muscular dystrophy type 2F
0.800 GeneticVariation UNIPROT A first missense mutation in the delta sarcoglycan gene associated with a severe phenotype and frequency of limb-girdle muscular dystrophy type 2F (LGMD2F) in Brazilian sarcoglycanopathies. 9832045 1998
dbSNP: rs11960617
rs11960617
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0428472
Disease:
Serum HDL cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs11960617
rs11960617
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C1445957
Disease:
Serum total cholesterol measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs11960617
rs11960617
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0392885
Disease:
High density lipoprotein measurement
0.700 GeneticVariation GWASDB Large-scale gene-centric meta-analysis across 32 studies identifies multiple lipid loci. 23063622 2012
dbSNP: rs121909298
rs121909298
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C1847667
Disease:
CARDIOMYOPATHY, DILATED, 1L
0.700 GeneticVariation UNIPROT Mutations in the human delta-sarcoglycan gene in familial and sporadic dilated cardiomyopathy. 10974018 2000
dbSNP: rs280471
rs280471
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0871470
Disease:
Systolic Pressure
0.700 GeneticVariation GWASCAT Leveraging Polygenic Functional Enrichment to Improve GWAS Power. 30595370 2019
dbSNP: rs32063
rs32063
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0036341
Disease:
Schizophrenia
0.700 GeneticVariation GWASDB Common variants on 8p12 and 1q24.2 confer risk of schizophrenia. 22037555 2011
dbSNP: rs456290
rs456290
Entrez Id: 6444;105377673
Gene Symbol: SGCD;LOC105377673
SGCD;LOC105377673
CUI: C0026691
Disease:
Mucocutaneous Lymph Node Syndrome
0.700 GeneticVariation GWASDB A genome-wide association analysis reveals 1p31 and 2p13.3 as susceptibility loci for Kawasaki disease. 21221998 2011
dbSNP: rs6877490
rs6877490
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0036341
Disease:
Schizophrenia
0.700 GeneticVariation GWASDB Common variants on 8p12 and 1q24.2 confer risk of schizophrenia. 22037555 2011
dbSNP: rs958444
rs958444
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0428568
Disease:
Fasting blood glucose measurement
0.700 GeneticVariation GWASCAT Pleiotropy informed adaptive association test of multiple traits using genome-wide association study summary data. 31021400 2019
dbSNP: rs121909298
rs121909298
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0878544
Disease:
Cardiomyopathies
0.020 GeneticVariation BEFREE Our findings demonstrate that, even in the presence of a second disease-causing mutation, the p.S151A mutation in the delta-sarcoglycan gene does not result in cardiomyopathy. 19259135 2009
dbSNP: rs121909298
rs121909298
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0878544
Disease:
Cardiomyopathies
0.020 GeneticVariation BEFREE Our results suggest that the p.S151A mutation causes a mild, subclinical phenotype of cardiomyopathy, which is prone to be overseen in patients carrying such sequence variants. 23695275 2014
dbSNP: rs121909298
rs121909298
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0018799
Disease:
Heart Diseases
0.010 GeneticVariation BEFREE This is controversial to our previous findings in a large consanguineous family where this p.S151A mutation showed no relevance for cardiac disease. 23695275 2014
dbSNP: rs121909298
rs121909298
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C1449563
Disease:
Cardiomyopathy, Familial Idiopathic
0.010 GeneticVariation BEFREE In this study, the potential of the p.S151A mutation to cause DCM was investigated by using two different approaches: (1) engineering and characterization of heterozygous knock-in (S151A-) mice carrying the p.S151A mutation and (2) evaluation of the potential of adeno-associated virus (AAV) 9-based cardiac-specific transfer of p.S151A-mutated Sgcd cDNA to rescue the cardiac phenotype in Sgcd-deficient (Sgcd-null) mice as it has been demonstrated for intact, wild-type Sgcd cDNA. 23695275 2014
dbSNP: rs13170573
rs13170573
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0520679
Disease:
Sleep Apnea, Obstructive
0.010 GeneticVariation BEFREE The GG, GC and CC genotypes of rs13170573 in control and OSA groups were 51.5% and 37.1%, 36.6% and 35.1%, and 11.9% and 27.8%, respectively. 25474115 2014
dbSNP: rs140616
rs140616
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0242383
Disease:
Age related macular degeneration
0.010 GeneticVariation BEFREE Moreover, the GATT haplotype in this gene (rs931798, rs140617, rs140616, and rs970476) is associated with lower odds of AMD (adjusted odds ratio (OR) 0.13; 95% CI 0.02⁻0.91; <i>p</i> = 0.041). 30257524 2018
dbSNP: rs267607045
rs267607045
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0686353
Disease:
Muscular Dystrophies, Limb-Girdle
0.010 GeneticVariation BEFREE We identified a novel missense mutation in exon 6 (p.A131P) of the delta-sarcoglycan gene, which in a homozygous state leads to the clinical picture of a limb girdle muscular dystrophy. 19259135 2009
dbSNP: rs397517921
rs397517921
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0686353
Disease:
Muscular Dystrophies, Limb-Girdle
0.010 GeneticVariation BEFREE We identified a novel missense mutation in exon 6 (p.A131P) of the delta-sarcoglycan gene, which in a homozygous state leads to the clinical picture of a limb girdle muscular dystrophy. 19259135 2009
dbSNP: rs41084
rs41084
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0006287
Disease:
Bronchopulmonary Dysplasia
0.010 GeneticVariation BEFREE Positive associations with pediatric BPD and the BDNF gene (Vall66), the GAD1 gene (4s2241165), and the dopamine transporter gene (rs41084) have been reported but none of these associations have been replicated in independent samples. 19264272 2009
dbSNP: rs41084
rs41084
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0006012
Disease:
Borderline Personality Disorder
0.010 GeneticVariation BEFREE Positive associations with pediatric BPD and the BDNF gene (Vall66), the GAD1 gene (4s2241165), and the dopamine transporter gene (rs41084) have been reported but none of these associations have been replicated in independent samples. 19264272 2009
dbSNP: rs776240936
rs776240936
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0009917
Disease:
Contracture
0.010 GeneticVariation BEFREE Upon cyclical cell stretching, cardiac myocytes expressing mutant δ-sarcoglycan R97Q or R71T have increased cell-impermeant dye uptake and undergo contractures at greater frequencies than myocytes expressing normal δ-sarcoglycan. 26968544 2016
dbSNP: rs794316
rs794316
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C1306459
Disease:
Primary malignant neoplasm
0.010 GeneticVariation BEFREE An association of the rs794316 polymorphism with cancer risk was detected in two genetic models (TT vs. AA: OR = 1.34, 95% CI = 1.03-1.74, P <0.001; TT vs. AT+AA: OR = 1.39, 95% CI = 1.09-1.77, P = 0.01). 27449288 2016
dbSNP: rs794316
rs794316
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0006826
Disease:
Malignant Neoplasms
0.010 GeneticVariation BEFREE An association of the rs794316 polymorphism with cancer risk was detected in two genetic models (TT vs. AA: OR = 1.34, 95% CI = 1.03-1.74, P <0.001; TT vs. AT+AA: OR = 1.39, 95% CI = 1.09-1.77, P = 0.01). 27449288 2016
dbSNP: rs931798
rs931798
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0242383
Disease:
Age related macular degeneration
0.010 GeneticVariation BEFREE After adjusting for clinical covariates, the G/A genotype of the SGCD gene (rs931798) significantly increases the odds of being diagnosed with AMD in 81% of cases (1.81; 95% CI 1.06⁻3.14; <i>p</i> = 0.031), especially the geographic atrophy phenotype (1.82; 95% CI 1.03⁻3.21; <i>p</i> = 0.038) compared to the G/G homozygous genotype. 30257524 2018
dbSNP: rs970476
rs970476
Entrez Id: 6444
Gene Symbol: SGCD
SGCD
CUI: C0242383
Disease:
Age related macular degeneration
0.010 GeneticVariation BEFREE Moreover, the GATT haplotype in this gene (rs931798, rs140617, rs140616, and rs970476) is associated with lower odds of AMD (adjusted odds ratio (OR) 0.13; 95% CI 0.02⁻0.91; <i>p</i> = 0.041). 30257524 2018