SLC10A2, solute carrier family 10 member 2, 6555

N. diseases: 66; N. variants: 9
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs56398830
rs56398830
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0242216
Disease:
Biliary calculi
0.700 GeneticVariation GWASCAT Genome-wide association meta-analysis yields 20 loci associated with gallstone disease. 30504769 2018
dbSNP: rs121917848
rs121917848
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C2750087
Disease:
Bile Acid Malabsorption, Primary
0.700 GeneticVariation UNIPROT Primary bile acid malabsorption caused by mutations in the ileal sodium-dependent bile acid transporter gene (SLC10A2). 9109432 1997
dbSNP: rs387906390
rs387906390
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C2750087
Disease:
Bile Acid Malabsorption, Primary
AAG 0.700 CausalMutation CLINVAR
dbSNP: rs72547505
rs72547505
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C2750087
Disease:
Bile Acid Malabsorption, Primary
0.700 GeneticVariation UNIPROT
dbSNP: rs56398830
rs56398830
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0008350
Disease:
Cholelithiasis
0.020 GeneticVariation BEFREE Five of the gallstone associations are protein-altering variants, and three (HNF4A p.Thr139Ile, SERPINA1 p.Glu366Lys, and SLC10A2 p.Pro290Ser) conferred per-allele odds ratios for gallstone disease of 1.30-1.36. 30325047 2019
dbSNP: rs56398830
rs56398830
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0008350
Disease:
Cholelithiasis
0.020 GeneticVariation BEFREE Two distinct low frequency missense variants in SLC10A2, encoding the apical sodium-dependent bile acid transporter (ASBT), associate with an increased risk of gallstone disease (Pro290Ser: OR = 1.36 [1.25-1.49], P = 2.1 × 10<sup>-12</sup>, MAF = 1%; Val98Ile: OR = 1.15 [1.10-1.20], P = 1.8 × 10<sup>-10</sup>, MAF = 4%). 30504769 2018
dbSNP: rs9514089
rs9514089
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0008350
Disease:
Cholelithiasis
0.020 GeneticVariation BEFREE We were not able to replicate the effect of rs9514089 on gallstone risk in the Sorbs. 22093174 2011
dbSNP: rs9514089
rs9514089
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0947622
Disease:
Cholecystolithiasis
0.020 GeneticVariation BEFREE We were not able to replicate the effect of rs9514089 on gallstone risk in the Sorbs. 22093174 2011
dbSNP: rs9514089
rs9514089
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0947622
Disease:
Cholecystolithiasis
0.020 GeneticVariation BEFREE Comprehensive statistical analysis provides strong evidence that rs9514089 is a genetic determinant especially in male non-obese gallstone carriers. 19823678 2009
dbSNP: rs9514089
rs9514089
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0008350
Disease:
Cholelithiasis
0.020 GeneticVariation BEFREE Comprehensive statistical analysis provides strong evidence that rs9514089 is a genetic determinant especially in male non-obese gallstone carriers. 19823678 2009
dbSNP: rs56398830
rs56398830
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0947622
Disease:
Cholecystolithiasis
0.010 GeneticVariation BEFREE Five of the gallstone associations are protein-altering variants, and three (HNF4A p.Thr139Ile, SERPINA1 p.Glu366Lys, and SLC10A2 p.Pro290Ser) conferred per-allele odds ratios for gallstone disease of 1.30-1.36. 30325047 2019
dbSNP: rs1424665740
rs1424665740
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0027947
Disease:
Neutropenia
0.010 GeneticVariation BEFREE Recently an alloantibody against HNA-4b which discriminates from HNA-4a by an Arg61His exchange of the glycoprotein encoded by the <i>ITGAM</i> gene was reported in neonatal alloimmune neutropenia. 30498408 2018
dbSNP: rs1424665740
rs1424665740
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0023530
Disease:
Leukopenia
0.010 GeneticVariation BEFREE Recently an alloantibody against HNA-4b which discriminates from HNA-4a by an Arg61His exchange of the glycoprotein encoded by the <i>ITGAM</i> gene was reported in neonatal alloimmune neutropenia. 30498408 2018
dbSNP: rs55971546
rs55971546
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0008350
Disease:
Cholelithiasis
0.010 GeneticVariation BEFREE Two distinct low frequency missense variants in SLC10A2, encoding the apical sodium-dependent bile acid transporter (ASBT), associate with an increased risk of gallstone disease (Pro290Ser: OR = 1.36 [1.25-1.49], P = 2.1 × 10<sup>-12</sup>, MAF = 1%; Val98Ile: OR = 1.15 [1.10-1.20], P = 1.8 × 10<sup>-10</sup>, MAF = 4%). 30504769 2018
dbSNP: rs9514089
rs9514089
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C0524620
Disease:
Metabolic Syndrome X
0.010 GeneticVariation BEFREE Here we assessed the effects of rs9514089 on gallstone risk and related phenotypes of the metabolic syndrome in the self-contained population of Sorbs (183 cases with gallstones/826 controls). 22093174 2011
dbSNP: rs188096
rs188096
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C1302401
Disease:
Adenoma of large intestine
0.010 GeneticVariation BEFREE Recently, an association of colorectal adenoma with two variants (c.507C>T;p.L169L and c.511G>T;p.A171S) of the ileal sodium dependent bile acid transporter gene (SLC10A2) has been reported. 18644122 2008
dbSNP: rs41281678
rs41281678
Entrez Id: 6555
Gene Symbol: SLC10A2
SLC10A2
CUI: C1302401
Disease:
Adenoma of large intestine
0.010 GeneticVariation BEFREE Recently, an association of colorectal adenoma with two variants (c.507C>T;p.L169L and c.511G>T;p.A171S) of the ileal sodium dependent bile acid transporter gene (SLC10A2) has been reported. 18644122 2008