SOX9, SRY-box transcription factor 9, 6662

N. diseases: 466; N. variants: 25
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs137853128
rs137853128
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1861922
Disease:
CAMPOMELIC DYSPLASIA
0.710 GeneticVariation BEFREE A long-term survivor with the acampomelic form of CD has an A76E amino acid substitution, while a severely affected CD patient had an in-frame deletion of amino acid residues 66-75. 12783851 2003
dbSNP: rs1042667
rs1042667
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1306459
Disease:
Primary malignant neoplasm
0.010 GeneticVariation BEFREE Results showed that SOX9 rs1042667 was significant associated with increased gliomas risk after adjusted by age, gender, family history of cancer, smoking status and alcohol status (Allele C vs A: OR=1.25; 95% CI=1.11-1.40; P=1.2×10-4). 27589569 2016
dbSNP: rs1042667
rs1042667
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0029408
Disease:
Degenerative polyarthritis
0.010 GeneticVariation BEFREE The interaction between the polymorphisms rs1042667 and rs12601701 also contribute to OA risk. 30813126 2019
dbSNP: rs1042667
rs1042667
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0006826
Disease:
Malignant Neoplasms
0.010 GeneticVariation BEFREE Results showed that SOX9 rs1042667 was significant associated with increased gliomas risk after adjusted by age, gender, family history of cancer, smoking status and alcohol status (Allele C vs A: OR=1.25; 95% CI=1.11-1.40; P=1.2×10-4). 27589569 2016
dbSNP: rs12601701
rs12601701
Entrez Id: 6662;400618;107987249
Gene Symbol: SOX9;SOX9-AS1;LOC107987249
SOX9;SOX9-AS1;LOC107987249
CUI: C0029408
Disease:
Degenerative polyarthritis
0.010 GeneticVariation BEFREE The interaction between the polymorphisms rs1042667 and rs12601701 also contribute to OA risk. 30813126 2019
dbSNP: rs1357275943
rs1357275943
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C2936694
Disease:
Swyer Syndrome
0.010 GeneticVariation BEFREE Results We have identified three different homozygous PPP2R3C variants, c.308T>C (p.L103P), c.578T>C (p.L193S) and c.1049T>C (p.F350S), in four girls with 46, XY complete gonadal dysgenesis. 30893644 2019
dbSNP: rs2229989
rs2229989
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1865783
Disease:
Pierre Robin sequence with pectus excavatum and rib and scapular anomalies
0.010 GeneticVariation BEFREE A novel SOX9 H169Q mutation in a family with overlapping phenotype of mild campomelic dysplasia and small patella syndrome. 24038782 2013
dbSNP: rs2229989
rs2229989
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1840061
Disease:
SMALL PATELLA SYNDROME
0.010 GeneticVariation BEFREE A novel SOX9 H169Q mutation in a family with overlapping phenotype of mild campomelic dysplasia and small patella syndrome. 24038782 2013
dbSNP: rs73354570
rs73354570
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0029458
Disease:
Osteoporosis, Postmenopausal
0.010 GeneticVariation BEFREE SNP rs73354570 of SOX9 was significantly associated with PMOP in both discovery stages (OR 1.24 [1.10-1.39], P = 3.56 × 10<sup>-4</sup>, χ<sup>2</sup> = 12.75) and combined samples (OR 1.25 [1.15-1.37], P = 5.25 × 10<sup>-7</sup>, χ<sup>2</sup> = 25.17). 31732751 2020
dbSNP: rs748989255
rs748989255
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C2751826
Disease:
Multiple Synostoses Syndrome 3
0.010 GeneticVariation BEFREE Here, we report that mice harboring the S99N mutation in Fgf9 develop the curly tail phenotype and partially or fully fused caudal vertebrae and limb joints, which mimic the major phenotypes of SYNS3 patients. 28169396 2017
dbSNP: rs769269532
rs769269532
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0000768
Disease:
Congenital Abnormality
0.010 GeneticVariation BEFREE A recurrent rare heterozygous missense variant in SOX9 gene (NM_000346.3: c.1405A>G, p.M469V) which had not been reported previously was identified in three CVM patients who had the clinical findings of congenital scoliosis without deformities in other systems. 31549955 2019
dbSNP: rs769269532
rs769269532
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0559260
Disease:
Congenital scoliosis
0.010 GeneticVariation BEFREE A recurrent rare heterozygous missense variant in SOX9 gene (NM_000346.3: c.1405A>G, p.M469V) which had not been reported previously was identified in three CVM patients who had the clinical findings of congenital scoliosis without deformities in other systems. 31549955 2019
dbSNP: rs137853129
rs137853129
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1861922
Disease:
CAMPOMELIC DYSPLASIA
G 0.800 CausalMutation CLINVAR
dbSNP: rs104894647
rs104894647
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1861923
Disease:
Acampomelic Campomelic Dysplasia
G 0.700 CausalMutation CLINVAR
dbSNP: rs1057518216
rs1057518216
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1861922
Disease:
CAMPOMELIC DYSPLASIA
T 0.700 CausalMutation CLINVAR
dbSNP: rs1057518669
rs1057518669
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1861922
Disease:
CAMPOMELIC DYSPLASIA
C 0.700 GeneticVariation CLINVAR
dbSNP: rs137853128
rs137853128
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1861923
Disease:
Acampomelic Campomelic Dysplasia
A 0.700 CausalMutation CLINVAR
dbSNP: rs137853130
rs137853130
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C1842462
Disease:
CAMPOMELIC DYSPLASIA WITH AUTOSOMAL SEX REVERSAL
A 0.700 CausalMutation CLINVAR
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR Novel missense mutation in the HMG box of SOX9 gene in a Japanese XY male resulted in campomelic dysplasia and severe defect in masculinization. 9452059 1998
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR The presence of diminished white matter and corpus callosal thinning in a case with a SOX9 mutation. 28965976 2018
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR A clinical and genetic study of campomelic dysplasia. 7666392 1995
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR The phenotype of survivors of campomelic dysplasia. 12161603 2002
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR Mutation analysis of SOX9 and single copy number variant analysis of the upstream region in eight patients with campomelic dysplasia and acampomelic campomelic dysplasia. 19921652 2009
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR Clinical and molecular characterization of a Brazilian cohort of campomelic dysplasia patients, and identification of seven new SOX9 mutations. 25983619 2015
dbSNP: rs1425166755
rs1425166755
Entrez Id: 6662;400618
Gene Symbol: SOX9;SOX9-AS1
SOX9;SOX9-AS1
CUI: C0432072
Disease:
Dysmorphic features
A 0.700 GeneticVariation CLINVAR Differentiating campomelic dysplasia from Cumming syndrome. 15754354 2005