TNF, tumor necrosis factor, 7124

N. diseases: 2724; N. variants: 31
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs1799964
rs1799964
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C2747816
Disease:
Complicated malaria
0.010 GeneticVariation BEFREE We examined a possible association of three single nucleotide polymorphisms (SNPs) of the tumor necrosis factor alpha (TNF) promoter -1031T>C (rs1799964), -863C>A (rs1800630), and -857C>T (rs1799724) with severe malaria in 466 adult patients having Plasmodium falciparum malaria in northwest Thailand. 17493155 2007
dbSNP: rs1800630
rs1800630
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C2747816
Disease:
Complicated malaria
0.010 GeneticVariation BEFREE We examined a possible association of three single nucleotide polymorphisms (SNPs) of the tumor necrosis factor alpha (TNF) promoter -1031T>C (rs1799964), -863C>A (rs1800630), and -857C>T (rs1799724) with severe malaria in 466 adult patients having Plasmodium falciparum malaria in northwest Thailand. 17493155 2007
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0024305
Disease:
Lymphoma, Non-Hodgkin
0.060 GeneticVariation BEFREE Two common single nucleotide polymorphisms in immunoregulatory genes (TNF G308A, rs1800629 and IL10 T3575A, rs1800890) have been recently reported as risk factors for non-Hodgkin lymphoma (NHL) in a large pooled analysis. 17510437 2007
dbSNP: rs745738344
rs745738344
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0004096
Disease:
Asthma
0.010 GeneticVariation BEFREE After stratification by atopic status, the heterozygous AG genotype of LT-alpha (A252G) was found to increase risk of asthma in atopic population [odds ratio (OR) = 2.00, 95% CI 1.09-3.67, p = 0.024]. 17536219 2007
dbSNP: rs370893734
rs370893734
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0004943
Disease:
Behcet Syndrome
0.010 GeneticVariation BEFREE The novel -G646A polymorphism of the TNFalpha promoter is associated with the HLA-B51 allele in Korean patients with Behçet's disease. 17657677 2007
dbSNP: rs3093662
rs3093662
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0003873
Disease:
Rheumatoid Arthritis
0.700 GeneticVariation GWASDB TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study. 17804836 2007
dbSNP: rs1799724
rs1799724
Entrez Id: 4049;7124
Gene Symbol: LTA;TNF
LTA;TNF
CUI: C0376358
Disease:
Malignant neoplasm of prostate
0.010 GeneticVariation BEFREE No TNF SNP was associated with prostate cancer risk in PLCO (P-trend > or = 0.16), while in the Nutrition Cohort, associations were significant for 2 highly correlated variants (rs1799724, 1800610, r2 = 0.95; P-trend = 0.04 and 0.02, respectively). 18196539 2008
dbSNP: rs1799724
rs1799724
Entrez Id: 4049;7124
Gene Symbol: LTA;TNF
LTA;TNF
CUI: C0600139
Disease:
Prostate carcinoma
0.010 GeneticVariation BEFREE No TNF SNP was associated with prostate cancer risk in PLCO (P-trend > or = 0.16), while in the Nutrition Cohort, associations were significant for 2 highly correlated variants (rs1799724, 1800610, r2 = 0.95; P-trend = 0.04 and 0.02, respectively). 18196539 2008
dbSNP: rs1800610
rs1800610
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0376358
Disease:
Malignant neoplasm of prostate
0.010 GeneticVariation BEFREE We examined associations between six TNF single nucleotide polymorphisms (SNPs) (rs1799964, rs1800630, rs1799724, rs1800629, rs361525, rs1800610) and prostate cancer risk among 2,321 cases and 2,560 controls from two nested case-control studies within the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO, n = 2,561, 5 SNPs) and the Cancer Prevention Study II Nutrition Cohort (Nutrition Cohort, n = 2,320, 6 SNPs). 18196539 2008
dbSNP: rs1800610
rs1800610
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0600139
Disease:
Prostate carcinoma
0.010 GeneticVariation BEFREE We examined associations between six TNF single nucleotide polymorphisms (SNPs) (rs1799964, rs1800630, rs1799724, rs1800629, rs361525, rs1800610) and prostate cancer risk among 2,321 cases and 2,560 controls from two nested case-control studies within the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO, n = 2,561, 5 SNPs) and the Cancer Prevention Study II Nutrition Cohort (Nutrition Cohort, n = 2,320, 6 SNPs). 18196539 2008
dbSNP: rs745738344
rs745738344
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0038454
Disease:
Cerebrovascular accident
0.010 GeneticVariation BEFREE Neither the A252G nor C804A polymorphism of the LTA gene was associated with stroke overall and any subtypes of ischemic stroke in the Japanese population. 18349535 2008
dbSNP: rs745738344
rs745738344
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0948008
Disease:
Ischemic stroke
0.010 GeneticVariation BEFREE Neither the A252G nor C804A polymorphism of the LTA gene was associated with stroke overall and any subtypes of ischemic stroke in the Japanese population. 18349535 2008
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0036690
Disease:
Septicemia
0.050 GeneticVariation BEFREE Carriage of the TNF rs1800629 A allele was associated with higher TNF-alpha serum concentrations on the first day after trauma and during follow-up (two-sided p = 5.0 x 10(-5)), with development of sepsis syndrome (odds ratio 7.14, two-sided p = 1.2 x 10(-6); external validation sample [n = 76]: odds ratio 3.3, one-sided p = .03), and with fatal outcome (odds ratio 7.65, two-sided p = 1.9 x 10(-6)). 18434886 2008
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0242966
Disease:
Systemic Inflammatory Response Syndrome
0.010 GeneticVariation BEFREE Carriage of the TNF rs1800629 A allele was associated with higher TNF-alpha serum concentrations on the first day after trauma and during follow-up (two-sided p = 5.0 x 10(-5)), with development of sepsis syndrome (odds ratio 7.14, two-sided p = 1.2 x 10(-6); external validation sample [n = 76]: odds ratio 3.3, one-sided p = .03), and with fatal outcome (odds ratio 7.65, two-sided p = 1.9 x 10(-6)). 18434886 2008
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C1304508
Disease:
Spindle cell hemangioma
0.010 GeneticVariation BEFREE We genotyped the TNF -308G/A polymorphism (rs1800629) by PCR-RFLP in 348 patients with SCH, 361 patients with BPAD and in 351 controls. 18515978 2008
dbSNP: rs1330189219
rs1330189219
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C0242379
Disease:
Malignant neoplasm of lung
0.010 GeneticVariation BEFREE In males, the C804A polymorphism was associated with lung cancer (CA + AA: CC, adjusted OR = 0.60, 95% CI = 0.37 - 0.97), whereas the T495C polymorphism was associated with gastric cancer (TC + CC: TT, adjusted OR = 1.68, 95% CI = 1.06 - 2.65). 18700950 2008
dbSNP: rs1330189219
rs1330189219
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C0684249
Disease:
Carcinoma of lung
0.010 GeneticVariation BEFREE In males, the C804A polymorphism was associated with lung cancer (CA + AA: CC, adjusted OR = 0.60, 95% CI = 0.37 - 0.97), whereas the T495C polymorphism was associated with gastric cancer (TC + CC: TT, adjusted OR = 1.68, 95% CI = 1.06 - 2.65). 18700950 2008
dbSNP: rs1330189219
rs1330189219
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C0006826
Disease:
Malignant Neoplasms
0.010 GeneticVariation BEFREE The C804A and T495C polymorphisms were associated with cancer in males (CA + AA: CC, adjusted OR = 0.72, 95% CI = 0.53 - 0.99; TC + CC: TT, adjusted OR = 1.45, 95% CI = 1.04 - 2.02; respectively) but not in females. 18700950 2008
dbSNP: rs1330189219
rs1330189219
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C1306460
Disease:
Primary malignant neoplasm of lung
0.010 GeneticVariation BEFREE In males, the C804A polymorphism was associated with lung cancer (CA + AA: CC, adjusted OR = 0.60, 95% CI = 0.37 - 0.97), whereas the T495C polymorphism was associated with gastric cancer (TC + CC: TT, adjusted OR = 1.68, 95% CI = 1.06 - 2.65). 18700950 2008
dbSNP: rs1330189219
rs1330189219
Entrez Id: 4049;7124;100287329
Gene Symbol: LTA;TNF;LOC100287329
LTA;TNF;LOC100287329
CUI: C1306459
Disease:
Primary malignant neoplasm
0.010 GeneticVariation BEFREE The C804A and T495C polymorphisms were associated with cancer in males (CA + AA: CC, adjusted OR = 0.72, 95% CI = 0.53 - 0.99; TC + CC: TT, adjusted OR = 1.45, 95% CI = 1.04 - 2.02; respectively) but not in females. 18700950 2008
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0006271
Disease:
Bronchiolitis
0.010 GeneticVariation BEFREE The following study populations were genotyped for 4 polymorphisms within TNF-beta (rs909253) and TNF-alpha (rs1799964, rs1799724, rs1800629): 322 asthmatic children, 151 children with severe respiratory syncytial virus (RSV) bronchiolitis and 270 controls. 18811622 2009
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0375023
Disease:
Respiratory syncytial virus (RSV) infection in conditions classified elsewhere and of unspecified site
0.010 GeneticVariation BEFREE The following study populations were genotyped for 4 polymorphisms within TNF-beta (rs909253) and TNF-alpha (rs1799964, rs1799724, rs1800629): 322 asthmatic children, 151 children with severe respiratory syncytial virus (RSV) bronchiolitis and 270 controls. 18811622 2009
dbSNP: rs361525
rs361525
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0011854
Disease:
Diabetes Mellitus, Insulin-Dependent
0.020 GeneticVariation BEFREE In this study, we examined two TNF promoter variants (rs 1800629 at position -308, and rs361525 at position -238) for TIDM association in 233 patients and 144 controls from the population of South Croatia. 18949133 2008
dbSNP: rs1800629
rs1800629
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0024305
Disease:
Lymphoma, Non-Hodgkin
0.060 GeneticVariation BEFREE Compared with the wild-type (GG), the AA genotype for the TNF promoter polymorphism G-308A (rs1800629) was associated with increased risk of NHL [odds ratio (OR), 2.14; 95% confidence interval (95% CI), 0.94-4.85], whereas the GA genotype was not (OR, 1.00; 95% CI, 0.74-1.34). 18990758 2008
dbSNP: rs3093662
rs3093662
Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0001175
Disease:
Acquired Immunodeficiency Syndrome
0.700 GeneticVariation GWASDB Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). 19115949 2009