TRAF6, TNF receptor associated factor 6, 7189

N. diseases: 254; N. variants: 10
Source: ALL
Variant Gene Disease Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs540386
rs540386
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0003873
Disease:
Rheumatoid Arthritis
0.720 GeneticVariation BEFREE Whereas TRAF6 rs540386 was not associated with RA susceptibility, it was however found to be a risk factor for reduced lumbar spine Z-score in the recessive model (OR = 3.34, 95% CI = (1.01-11.00), p = 0.038). 30506403 2019
dbSNP: rs540386
rs540386
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0003873
Disease:
Rheumatoid Arthritis
0.720 GeneticVariation GWASDB High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis. 23143596 2012
dbSNP: rs540386
rs540386
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0003873
Disease:
Rheumatoid Arthritis
0.720 GeneticVariation BEFREE In addition, SNP rs540386, which was previously reported to be associated with rheumatoid arthritis (RA), was found to be in linkage disequilibrium with these 2 SNPs (r(2) = 0.95) and demonstrated evidence of association with SLE in the same direction (meta-analysis P = 9.15 × 10(-4) , OR 0.89 [95% CI 0.83-0.95]). 22231568 2012
dbSNP: rs10501157
rs10501157
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C1519383
Disease:
Smoking Behaviors
0.700 GeneticVariation GWASCAT Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. 26053186 2015
dbSNP: rs10501157
rs10501157
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0037369
Disease:
Smoking
0.700 GeneticVariation GWASCAT Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. 26053186 2015
dbSNP: rs16928973
rs16928973
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0011860
Disease:
Diabetes Mellitus, Non-Insulin-Dependent
0.010 GeneticVariation BEFREE A significantly lower T allele frequency in the TRAF6 rs16928973 was observed in T2DM patients with both microvascular and macrovascular complications compared with patients without any complication under the allelic model (T vs. C: OR=0.36, 95% CI=0.14-0.98, P=0.038). 29046236 2017
dbSNP: rs331457
rs331457
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0275551
Disease:
Primary bacterial peritonitis
0.010 GeneticVariation BEFREE In the combined prospective-retrospective analysis the frequency of SBP differed between the four haplotypes (P = 0.014) and was the highest in 102 patients carrying the rs331457 but not the rs5030419 variant, when compared to other haplotypes (odds ratio 1.95 [1.22-3.12]) or to the wild-type (odds ratio 1.71 [1.04-2.82]). 28687809 2017
dbSNP: rs5030419
rs5030419
Entrez Id: 5896;7189
Gene Symbol: RAG1;TRAF6
RAG1;TRAF6
CUI: C0275551
Disease:
Primary bacterial peritonitis
0.010 GeneticVariation BEFREE In the combined prospective-retrospective analysis the frequency of SBP differed between the four haplotypes (P = 0.014) and was the highest in 102 patients carrying the rs331457 but not the rs5030419 variant, when compared to other haplotypes (odds ratio 1.95 [1.22-3.12]) or to the wild-type (odds ratio 1.71 [1.04-2.82]). 28687809 2017
dbSNP: rs16928973
rs16928973
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0011881
Disease:
Diabetic Nephropathy
0.010 GeneticVariation BEFREE Significant association was also found between rs16928973 in TRAF6 gene and diabetic nephropathy (DN) under the allelic model. 27062898 2016
dbSNP: rs5030411
rs5030411
Entrez Id: 5896;7189
Gene Symbol: RAG1;TRAF6
RAG1;TRAF6
CUI: C0948008
Disease:
Ischemic stroke
0.010 GeneticVariation BEFREE Moreover, a significant association of rs503</span>0411 with TC levels in IS patients under the additive model [β 0.16(0.01-0.30), P adj = 0.034] and recessive model [β 0.45(0.12-0.78), P adj = 0.007] was observed after adjustment by age and sex. 25999280 2015
dbSNP: rs5030416
rs5030416
Entrez Id: 5896;7189
Gene Symbol: RAG1;TRAF6
RAG1;TRAF6
CUI: C0948008
Disease:
Ischemic stroke
0.010 GeneticVariation BEFREE The haplotype rs5030416 (allele C)-rs5030411 (allele C) was significantly associated with IS susceptibility (P adj = 0.015). 25999280 2015
dbSNP: rs5030411
rs5030411
Entrez Id: 5896;7189
Gene Symbol: RAG1;TRAF6
RAG1;TRAF6
CUI: C0043144
Disease:
Wheezing
0.010 GeneticVariation BEFREE Intermediate-onset wheeze was associated with SNPs in several genes in the IL33-IL1RL1 pathway after applying multiple testing correction in the meta-analysis: 2 IL33 SNPs (rs4742170 and rs7037276), 1 IL-1 receptor accessory protein (IL1RAP) SNP (rs10513854), and 1 TRAF6 SNP (rs5030411). 24568840 2014
dbSNP: rs4755453
rs4755453
Entrez Id: 5896;7189
Gene Symbol: RAG1;TRAF6
RAG1;TRAF6
CUI: C0243026
Disease:
Sepsis
0.010 GeneticVariation BEFREE The association analysis revealed that rs4755453</span>, an intronic SNP of TRAF6, was significantly associated with susceptibility to sepsis-induced ALI. 22901274 2012
dbSNP: rs4755453
rs4755453
Entrez Id: 5896;7189
Gene Symbol: RAG1;TRAF6
RAG1;TRAF6
CUI: C0036690
Disease:
Septicemia
0.010 GeneticVariation BEFREE The association analysis revealed that rs4755453</span>, an intronic SNP of TRAF6, was significantly associated with susceptibility to sepsis-induced ALI. 22901274 2012
dbSNP: rs5030437
rs5030437
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0040034
Disease:
Thrombocytopenia
0.010 GeneticVariation BEFREE Finally, evidence of family-based association in 34 African American pedigrees with the presence of thrombocytopenia was detected in 1 available SNP (rs5030437) with a Z score magnitude of 2.28 (P = 0.02) under a dominant model. 22231568 2012
dbSNP: rs5030470
rs5030470
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0040034
Disease:
Thrombocytopenia
0.010 GeneticVariation BEFREE The presence of thrombocytopenia improved the overall results in different populations (meta-analysis P = 1.99 × 10(-6) , OR 0.57 [95% CI 0.45-0.72], for rs5030470). 22231568 2012
dbSNP: rs540386
rs540386
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0039483
Disease:
Giant Cell Arteritis
0.010 GeneticVariation BEFREE Our data do not support a role of the rs540386 TRAF6 variant as a key component of the genetic network underlying SSc and GCA. 22589256 2012
dbSNP: rs540386
rs540386
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0036421
Disease:
Systemic Scleroderma
0.010 GeneticVariation BEFREE Our data do not support a role of the rs540386 TRAF6 variant as a key component of the genetic network underlying SSc and GCA. 22589256 2012
dbSNP: rs540386
rs540386
Entrez Id: 7189
Gene Symbol: TRAF6
TRAF6
CUI: C0024141
Disease:
Lupus Erythematosus, Systemic
0.010 GeneticVariation BEFREE In addition, SNP rs540386, which was previously reported to be associated with rheumatoid arthritis (RA), was found to be in linkage disequilibrium with these 2 SNPs (r(2) = 0.95) and demonstrated evidence of association with SLE in the same direction (meta-analysis P = 9.15 × 10(-4) , OR 0.89 [95% CI 0.83-0.95]). 22231568 2012