Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		1.000 0.877 8 2005 2019
dbSNP: rs2070600
rs2070600
AGER
0.561 0.760 6 32183666 missense variant C/T snv 5.3E-02 3.6E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.710 1.000 2 2007 2011
dbSNP: rs7574865
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.900 0.966 3 2007 2017
dbSNP: rs2228145
rs2228145
IL6R
0.602 0.720 1 154454494 missense variant A/C;T snv 0.38; 1.2E-05
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.850 0.889 2 2010 2019
dbSNP: rs3087243
rs3087243
CTLA4
0.623 0.720 2 203874196 downstream gene variant G/A snv 0.37
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.850 0.818 4 2008 2019
dbSNP: rs1800625
rs1800625
AGER ; PBX2
0.641 0.680 6 32184665 upstream gene variant A/G snv 0.15
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 1 2011 2011
dbSNP: rs6679677
rs6679677
PHTF1
0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 2 2007 2019
dbSNP: rs2104286
rs2104286
IL2RA
0.662 0.440 10 6057082 intron variant T/C snv 0.18
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.830 1.000 2 2012 2015
dbSNP: rs34536443
rs34536443
TYK2
0.667 0.400 19 10352442 missense variant G/C snv 2.7E-02 2.8E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.830 0.857 2 2012 2019
dbSNP: rs2736340
rs2736340 		0.683 0.480 8 11486464 upstream gene variant C/T snv 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.830 1.000 1 2009 2017
dbSNP: rs6822844
rs6822844 		0.689 0.520 4 122588266 regulatory region variant G/T snv 0.10
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.770 1.000 1 2007 2020
dbSNP: rs706778
rs706778
IL2RA
0.695 0.320 10 6056986 intron variant C/T snv 0.46
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 2 2010 2019
dbSNP: rs72928038
rs72928038
BACH2
0.695 0.360 6 90267049 intron variant G/A snv 0.11
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.810 1.000 1 2012 2016
dbSNP: rs2187668
rs2187668
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3077
rs3077
HLA-DPA1
0.701 0.440 6 33065245 3 prime UTR variant A/G snv 0.29
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 2 2007 2009
dbSNP: rs1800630
rs1800630
LTA ; TNF ; LOC100287329
0.701 0.480 6 31574699 upstream gene variant C/A snv 0.14
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.720 0.667 1 2011 2019
dbSNP: rs3117582
rs3117582
BAG6 ; APOM
0.716 0.440 6 31652743 intron variant T/G snv 7.1E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 2 2007 2011
dbSNP: rs7731626
rs7731626
ANKRD55
0.716 0.240 5 56148856 intron variant G/A snv 0.30
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 1 2014 2019
dbSNP: rs2076530
rs2076530
BTNL2 ; TSBP1-AS1
0.724 0.640 6 32396039 missense variant T/C snv 0.42 0.40
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.710 1.000 3 2005 2011
dbSNP: rs2395185
rs2395185
HLA-DRB9
0.724 0.360 6 32465390 intron variant G/T snv 0.29
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs9275572
rs9275572 		0.724 0.360 6 32711222 upstream gene variant A/G;T snv
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 2 2007 2011
dbSNP: rs9277535
rs9277535
HLA-DPB1
0.724 0.440 6 33087084 3 prime UTR variant A/G snv 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.710 1.000 2 2007 2018
dbSNP: rs4810485
rs4810485
CD40
0.732 0.480 20 46119308 intron variant T/A;G snv
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.840 1.000 3 2008 2016
dbSNP: rs11889341
rs11889341
STAT4
0.732 0.480 2 191079016 intron variant C/T snv 0.21
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 1 2014 2019
dbSNP: rs6920220
rs6920220 		0.742 0.440 6 137685367 intron variant G/A snv 0.16
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.900 0.938 5 2007 2019