Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs11747270
rs11747270
IRGM
0.790 0.240 5 150879305 intron variant A/G snv 0.21
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.820 0.667 1 2008 2020
dbSNP: rs224136
rs224136 		0.925 0.120 10 62710915 intron variant C/A;T snv 0.34
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.810 0.667 1 2007 2019
dbSNP: rs4263839
rs4263839
TNFSF15
0.807 0.160 9 114804160 intron variant A/G snv 0.75
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.830 0.750 1 2008 2014
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.860 0.800 2 2005 2016
dbSNP: rs3024505
rs3024505 		0.790 0.320 1 206766559 upstream gene variant G/A snv 0.11
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.850 0.875 1 2008 2017
dbSNP: rs1050152
rs1050152
SLC22A4 ; MIR3936HG
0.776 0.480 5 132340627 missense variant C/T snv 0.29 0.28
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.800 0.917 1 2006 2017
dbSNP: rs2066847
rs2066847
NOD2
0.716 0.400 16 50729868 frameshift variant C/-;CC delins 1.5E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.890 0.923 4 2005 2019
dbSNP: rs2066844
rs2066844
NOD2
0.587 0.520 16 50712015 missense variant C/T snv 2.6E-02 2.9E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		1.000 0.940 2 2001 2018
dbSNP: rs11209026
rs11209026
IL23R
0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.900 0.944 8 2006 2020
dbSNP: rs2066845
rs2066845
NOD2
0.611 0.600 16 50722629 missense variant G/C;T snv 1.1E-02; 2.2E-04
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		1.000 0.949 3 2001 2019
dbSNP: rs2241880
rs2241880
ATG16L1 ; SCARNA5
0.627 0.600 2 233274722 missense variant A/G snv 0.45 0.44
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.900 0.961 4 2007 2020
dbSNP: rs2076756
rs2076756
NOD2
0.882 0.040 16 50722970 intron variant A/G snv 0.17
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.830 1.000 6 2007 2019
dbSNP: rs11465804
rs11465804
IL23R
0.752 0.320 1 67236843 intron variant T/G snv 4.4E-02 5.4E-02
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.800 1.000 4 2006 2010
dbSNP: rs199883290
rs199883290
NOD2
0.925 0.120 16 50729867 missense variant G/A;C snv 4.0E-06; 1.5E-02 7.0E-06
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.700 1.000 4 2007 2012
dbSNP: rs2542151
rs2542151 		0.763 0.480 18 12779948 upstream gene variant G/T snv 0.83
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.880 1.000 4 2007 2016
dbSNP: rs540973741
rs540973741
NOD2
0.925 0.120 16 50729868 frameshift variant C/-;CC delins
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.700 1.000 4 2007 2012
dbSNP: rs5743293
rs5743293
NOD2
0.807 0.200 16 50729868 frameshift variant C/-;CC delins
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.830 1.000 4 2007 2017
dbSNP: rs1343151
rs1343151
IL23R
0.752 0.400 1 67253446 intron variant G/A snv 0.41
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.800 1.000 3 2006 2007
dbSNP: rs1893217
rs1893217
PTPN2
0.742 0.440 18 12809341 intron variant A/G snv 0.12
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.850 1.000 3 2008 2016
dbSNP: rs212388
rs212388
LOC105378083 ; LOC112267968
0.827 0.240 6 159069404 intron variant C/G;T snv
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.810 1.000 3 2010 2017
dbSNP: rs3764147
rs3764147
LACC1
0.807 0.280 13 43883789 missense variant A/G snv 0.28 0.27
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.810 1.000 3 2008 2017
dbSNP: rs6478109
rs6478109
TNFSF15
0.752 0.320 9 114806486 upstream gene variant A/G snv 0.74
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.830 1.000 3 2005 2016
dbSNP: rs9858542
rs9858542
BSN
0.925 0.040 3 49664550 synonymous variant G/A snv 0.26 0.27
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.810 1.000 3 2007 2010
dbSNP: rs10045431
rs10045431 		0.851 0.240 5 159387525 intron variant A/C snv 0.78
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.810 1.000 2 2008 2014
dbSNP: rs10188217
rs10188217
PUS10
0.925 0.080 2 60990407 intron variant T/A;C snv
CUI: C0010346
Disease: Crohn Disease
Crohn Disease 		0.800 1.000 2 2008 2011