Source: GWASCAT

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs7574865
rs7574865
STAT4
0.574 0.720 2 191099907 intron variant T/G snv 0.79
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.967 7 2007 2017
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.972 6 2004 2019
dbSNP: rs2736340
rs2736340 		0.683 0.480 8 11486464 upstream gene variant C/T snv 0.25
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.870 1.000 5 2009 2019
dbSNP: rs2230926
rs2230926
TNFAIP3
0.662 0.440 6 137874929 missense variant T/C;G snv 4.0E-06; 5.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 0.867 4 2008 2019
dbSNP: rs2205960
rs2205960
TNFSF4
0.763 0.400 1 173222336 intergenic variant G/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.880 1.000 4 2009 2019
dbSNP: rs10488631
rs10488631
TNPO3
0.742 0.280 7 128954129 upstream gene variant T/C snv 9.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 4 2008 2016
dbSNP: rs6568431
rs6568431
ATG5
0.790 0.320 6 106140931 intron variant A/C snv 0.61
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 4 2008 2017
dbSNP: rs7097397
rs7097397
WDFY4
0.925 0.120 10 48817351 missense variant G/A snv 0.38 0.31
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 4 2010 2016
dbSNP: rs11889341
rs11889341
STAT4
0.732 0.480 2 191079016 intron variant C/T snv 0.21
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.710 1.000 4 2015 2018
dbSNP: rs2431098
rs2431098 		0.827 0.240 5 160460329 intron variant A/G;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 4 2015 2019
dbSNP: rs6679677
rs6679677
PHTF1
0.653 0.320 1 113761186 upstream gene variant C/A snv 6.7E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 4 2015 2019
dbSNP: rs1143679
rs1143679
ITGAM
0.732 0.520 16 31265490 missense variant G/A snv 9.7E-02 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.900 1.000 3 2009 2019
dbSNP: rs10036748
rs10036748
TNIP1
0.752 0.360 5 151078585 intron variant C/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 3 2009 2017
dbSNP: rs4917014
rs4917014 		0.807 0.360 7 50266267 upstream gene variant T/G snv 0.26
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.830 1.000 3 2009 2017
dbSNP: rs13385731
rs13385731
RASGRP3
0.882 0.200 2 33476823 intron variant T/C snv 6.3E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2009 2017
dbSNP: rs1801274
rs1801274
FCGR2A
0.597 0.800 1 161509955 missense variant A/C;G snv 4.0E-06; 0.48
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2008 2017
dbSNP: rs4948496
rs4948496
ARID5B
0.925 0.120 10 62045858 intron variant T/C snv 0.55
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2013 2016
dbSNP: rs9888739
rs9888739
ITGAM
0.882 0.120 16 31301932 intron variant C/T snv 0.26
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.810 1.000 3 2008 2014
dbSNP: rs12531711
rs12531711
TNPO3
0.827 0.200 7 128977412 intron variant A/C;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 3 2011 2017
dbSNP: rs2187668
rs2187668
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 3 2008 2016
dbSNP: rs4728142
rs4728142 		0.732 0.320 7 128933913 upstream gene variant G/A snv 0.38
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 3 2009 2016
dbSNP: rs7708392
rs7708392
TNIP1
0.732 0.400 5 151077924 intron variant G/C snv 0.44
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.730 1.000 3 2009 2018
dbSNP: rs35000415
rs35000415
IRF5
1.000 0.080 7 128945562 intron variant C/T snv 9.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 3 2015 2017
dbSNP: rs7444
rs7444
UBE2L3
1.000 0.080 22 21622645 3 prime UTR variant T/C snv 0.32
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 3 2015 2017
dbSNP: rs7941765
rs7941765 		0.882 0.160 11 128629105 intron variant T/C snv 0.66
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 3 2015 2019