Source: ALL

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs1064795104
rs1064795104
0.790 0.440 2 72498492 stop gained A/C snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 1.000 2 2013 2014
dbSNP: rs121909149
rs121909149
0.925 0.160 4 2831573 missense variant G/A;C snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.020 1.000 2 2012 2014
dbSNP: rs1057516036
rs1057516036
0.925 0.160 7 94423065 missense variant G/A snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 1.000 1 2016 2016
dbSNP: rs121908668
rs121908668
0.882 0.240 11 68357673 missense variant G/T snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2015 2015
dbSNP: rs121912438
rs121912438
0.605 0.520 21 31667299 missense variant G/A;C;T snv 1.2E-05; 8.0E-06
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2018 2018
dbSNP: rs1473998316
rs1473998316
1.000 0.080 17 50195926 synonymous variant A/G snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2007 2007
dbSNP: rs151344517
rs151344517
0.742 0.320 18 12337505 missense variant C/T snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 1.000 1 2010 2010
dbSNP: rs1544410
rs1544410
VDR
0.542 0.760 12 47846052 intron variant C/A;G;T snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2015 2015
dbSNP: rs1557043622
rs1557043622
0.695 0.400 X 48909843 missense variant C/A snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 1.000 1 2019 2019
dbSNP: rs2228570
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2019 2019
dbSNP: rs2273073
rs2273073
0.882 0.120 20 6770235 missense variant T/C;G snv 2.4E-02
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2008 2008
dbSNP: rs235768
rs235768
0.807 0.160 20 6778468 missense variant A/G;T snv 0.67
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2006 2006
dbSNP: rs312009
rs312009
0.925 0.080 11 68309770 upstream gene variant T/A;C snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2019 2019
dbSNP: rs4355801
rs4355801
0.882 0.120 8 118911634 regulatory region variant A/G;T snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2008 2008
dbSNP: rs4988321
rs4988321
0.851 0.160 11 68406721 missense variant G/A;C snv 3.8E-02
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2019 2019
dbSNP: rs5742905
rs5742905
CBS
0.701 0.360 21 43063074 missense variant A/G snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2018 2018
dbSNP: rs72645347
rs72645347
0.790 0.280 17 50196337 missense variant G/A snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2007 2007
dbSNP: rs72648365
rs72648365
0.925 0.240 17 50193990 missense variant G/A;C snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2007 2007
dbSNP: rs76763715
rs76763715
GBA
0.658 0.520 1 155235843 missense variant T/C;G snv 2.3E-03
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2008 2008
dbSNP: rs773472534
rs773472534
0.925 0.120 3 193618885 synonymous variant G/A snv 2.8E-05
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2018 2018
dbSNP: rs876657421
rs876657421
CBS
0.763 0.240 21 43063074 coding sequence variant -/CCCAGCAAAAGCCCCACCTGGATGATCCACCCCAGTGATCTGCAGAGGGCGCGGCTTCAGGGCTCAAG;CCCAGCAAAAGCCCCACCTGGGTGATCCACCCCAGTGATCTGCAGAGGGCGCGGCTTCAGGGCTCAAG delins
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2018 2018
dbSNP: rs9536314
rs9536314
KL
0.925 0.160 13 33054001 missense variant T/A;G snv 0.14
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.010 1.000 1 2015 2015
dbSNP: rs1057518930
rs1057518930
1.000 0.080 17 50197009 splice donor variant C/G snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 0
dbSNP: rs1555222973
rs1555222973
0.851 0.160 11 46312636 inframe deletion AAG/- delins
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 0
dbSNP: rs1569508922
rs1569508922
0.882 0.160 X 111681268 missense variant T/A snv
CUI: C0029453
Disease: Osteopenia
Osteopenia
0.700 0