Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs11858164
rs11858164
LIPC ; ALDH1A2 ; LIPC-AS1
15 58450532 intron variant T/G snv 0.39
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2008 2008
dbSNP: rs4149268
rs4149268
ABCA1
1.000 0.040 9 104884939 intron variant C/T snv 0.46
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2008 2008
dbSNP: rs7205804
rs7205804
CETP
16 56970977 intron variant G/A snv 0.34
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2008 2008
dbSNP: rs7240405
rs7240405
LOC105372112
18 49632720 intergenic variant A/G snv 0.86
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2008 2008
dbSNP: rs2271293
rs2271293
NUTF2
1.000 0.040 16 67868167 intron variant G/A snv 0.11
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2009 2009
dbSNP: rs2338104
rs2338104
KCTD10
1.000 0.040 12 109457363 non coding transcript exon variant C/G snv 0.58
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2008 2009
dbSNP: rs4939883
rs4939883
LOC105372112
1.000 0.040 18 49640844 TF binding site variant T/C;G snv
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2009 2009
dbSNP: rs157580
rs157580
TOMM40
0.882 0.160 19 44892009 intron variant G/A snv 0.69
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs174547
rs174547
FADS1 ; FADS2
0.742 0.240 11 61803311 intron variant T/C snv 0.28
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs255049
rs255049
DPEP3
1.000 0.040 16 67979568 intron variant T/C snv 0.34
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs2967605
rs2967605
RAB11B
0.925 0.040 19 8404854 downstream gene variant C/T snv 0.20
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs3905000
rs3905000
ABCA1
0.925 0.080 9 104894789 intron variant G/A snv 0.14
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs471364
rs471364
TTC39B
1.000 0.040 9 15289580 intron variant C/T snv 0.87
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs6754295
rs6754295 		1.000 0.040 2 20983311 regulatory region variant T/G snv 0.27
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs7395662
rs7395662 		0.882 0.080 11 48497341 downstream gene variant A/G snv 0.56
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs7679
rs7679
PCIF1
0.925 0.160 20 45947863 3 prime UTR variant T/C snv 0.13
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs9891572
rs9891572 		1.000 0.040 17 2525214 intergenic variant C/T snv 0.17
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2009 2009
dbSNP: rs10489615
rs10489615
GALNT2
1 230169242 intron variant A/C;G snv
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2010 2010
dbSNP: rs12449157
rs12449157
GFOD2
1.000 0.040 16 67674994 3 prime UTR variant A/G snv 0.30
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2010 2010
dbSNP: rs261334
rs261334
LIPC ; ALDH1A2 ; LIPC-AS1
15 58434545 intron variant G/C snv 0.73
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2010 2010
dbSNP: rs2814944
rs2814944 		1.000 0.040 6 34585020 downstream gene variant G/A snv 0.20
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2010 2010
dbSNP: rs325
rs325
LPL
8 19961817 intron variant T/C snv 9.0E-02
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2010 2010
dbSNP: rs643531
rs643531
TTC39B
9 15296036 intron variant C/A snv 0.89
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2010 2010
dbSNP: rs173539
rs173539 		0.882 0.080 16 56954132 intergenic variant C/T snv 0.33
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 2 2009 2011
dbSNP: rs11216126
rs11216126 		1.000 0.040 11 116746524 downstream gene variant A/C snv 0.11
CUI: C0428472
Disease: Serum HDL cholesterol measurement
Serum HDL cholesterol measurement 		0.700 1.000 1 2011 2011