Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2076530
rs2076530
BTNL2 ; TSBP1-AS1
0.724 0.640 6 32396039 missense variant T/C snv 0.42 0.40
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.710 1.000 3 2005 2011
dbSNP: rs2076537
rs2076537
TSBP1 ; TSBP1-AS1
0.925 0.200 6 32349858 non coding transcript exon variant G/A snv 0.37 0.42
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2187668
rs2187668
HLA-DQA1 ; HLA-DQA2 ; LOC107986589
0.701 0.480 6 32638107 intron variant C/T snv 3.3E-03
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2239689
rs2239689
TNXB
0.925 0.120 6 32062507 intron variant G/A snv 0.33 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2239804
rs2239804
HLA-DRA
0.851 0.240 6 32443746 intron variant T/A;C snv 0.51
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2260000
rs2260000
PRRC2A
0.851 0.200 6 31625699 intron variant A/G snv 0.29
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2261033
rs2261033
PRRC2A
0.925 0.160 6 31635814 non coding transcript exon variant A/G snv 0.42
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2281829
rs2281829
UQCC2
1.000 0.120 6 33707865 intron variant A/G snv 0.40
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2395182
rs2395182
HLA-DRA
0.851 0.280 6 32445540 downstream gene variant G/T snv 0.76
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2395185
rs2395185
HLA-DRB9
0.724 0.360 6 32465390 intron variant G/T snv 0.29
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs241407
rs241407
LOC100294145
0.925 0.200 6 32894963 upstream gene variant C/T snv 9.7E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2524279
rs2524279 		1.000 0.120 6 31425129 intron variant A/G snv 5.3E-02
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2581
rs2581
HLA-DOA
1.000 0.120 6 33006624 3 prime UTR variant G/C;T snv
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2647012
rs2647012 		0.790 0.320 6 32696681 intergenic variant T/C snv 0.64
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2734335
rs2734335
C2 ; CYP21A2
1.000 0.120 6 31926167 intron variant G/A snv 0.53
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2844479
rs2844479 		0.925 0.200 6 31605179 intergenic variant A/C snv 0.34
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs2849015
rs2849015 		0.925 0.160 6 32231159 intergenic variant G/A snv 0.38
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3093023
rs3093023
CCR6 ; LOC105378122
0.851 0.160 6 167120802 intron variant G/A snv 0.34
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.800 1.000 3 2010 2014
dbSNP: rs3115553
rs3115553
TSBP1-AS1
0.851 0.200 6 32278050 intron variant C/T snv 0.25
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3115573
rs3115573 		1.000 0.120 6 32251066 upstream gene variant A/G snv 0.41
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3115663
rs3115663
PRRC2A ; MIR6832
0.827 0.360 6 31634066 non coding transcript exon variant T/C snv 0.17
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3117098
rs3117098
HCG23 ; TSBP1-AS1
0.851 0.280 6 32390736 non coding transcript exon variant G/A snv 0.72
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3117222
rs3117222
HLA-DPA2
0.882 0.280 6 33093172 intron variant C/T snv 0.33
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3128917
rs3128917
HLA-DPA2
0.925 0.200 6 33092219 non coding transcript exon variant T/G snv 0.33
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011
dbSNP: rs3129882
rs3129882
HLA-DRA
0.807 0.240 6 32441753 intron variant G/A snv 0.56
CUI: C0003873
Disease: Rheumatoid Arthritis
Rheumatoid Arthritis 		0.700 1.000 3 2007 2011