Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs13195509
rs13195509
BTN2A1
1.000 0.080 6 26463432 missense variant G/A snv 5.7E-02 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13211507
rs13211507
PGBD1
0.882 0.200 6 28289600 intron variant T/C snv 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1419183
rs1419183
ZSCAN26
1.000 0.080 6 28275017 intron variant A/C snv 0.17
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1480380
rs1480380
HLA-DMB
0.763 0.360 6 32945469 intron variant C/T snv 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1517352
rs1517352
STAT4
0.851 0.160 2 191066738 intron variant A/C snv 0.45
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2011 2011
dbSNP: rs1564267
rs1564267 		0.925 0.160 8 11480378 non coding transcript exon variant T/A;C;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2013 2013
dbSNP: rs1634718
rs1634718
MUC22
0.925 0.160 6 31005088 regulatory region variant A/G snv 0.20
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs16833239
rs16833239
STAT4
1.000 0.080 2 191075534 intron variant G/A snv 8.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2013 2013
dbSNP: rs175597
rs175597
H2BC15
0.925 0.160 6 27842848 intron variant T/C snv 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs185819
rs185819
TNXB
0.851 0.200 6 32082290 missense variant T/A;C;G snv 8.2E-06; 0.58; 4.1E-06
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1980493
rs1980493
BTNL2 ; TSBP1-AS1
0.776 0.400 6 32395438 intron variant T/C snv 0.13
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs200953
rs200953
H1-5
1.000 0.080 6 27869489 upstream gene variant T/C snv 0.12
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs200991
rs200991
H2BC15
1.000 0.080 6 27847716 intron variant C/A snv 0.21
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs200997
rs200997
H2BC15
1.000 0.080 6 27844037 intron variant G/A snv 0.41
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs204990
rs204990
GPSM3
0.851 0.280 6 32193653 intron variant C/A;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs204994
rs204994
PBX2
0.925 0.120 6 32187221 non coding transcript exon variant C/T snv 0.18 0.21
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs205284
rs205284 		1.000 0.080 6 34584135 downstream gene variant C/G;T snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2013 2013
dbSNP: rs2071591
rs2071591
ATP6V1G2 ; NFKBIL1 ; ATP6V1G2-DDX39B
0.925 0.160 6 31548022 intron variant G/A;C snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs2071725
rs2071725
SCUBE1 ; LOC105373051
1.000 0.080 22 43213754 intron variant G/A snv 0.14
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2008 2008
dbSNP: rs2084654
rs2084654 		1.000 0.080 7 129089074 intergenic variant A/G snv 0.39
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs2239804
rs2239804
HLA-DRA
0.851 0.240 6 32443746 intron variant T/A;C snv 0.51
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs2242660
rs2242660
PRRC2A
0.925 0.160 6 31629976 intron variant G/A snv 0.46
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs2242665
rs2242665
CYP21A2 ; SLC44A4
0.882 0.160 6 31871532 missense variant C/T snv 0.60 0.60
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs2251396
rs2251396
MICA-AS1
0.827 0.240 6 31396930 upstream gene variant G/A snv 0.24
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs2269426
rs2269426
TNXB
0.807 0.280 6 32108722 intron variant G/A snv 0.35
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014