Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5972
Gene Symbol: REN
REN
0.010 AlteredExpression group BEFREE The results indicated that PNE led to bone dysplasia in the fetuses and reduced bone mass in the adult offspring, which was mediated by the sustained activation of the local bone renin angiotensin system (RAS) and suppressed osteogenic differentiation before and after birth. 31500447 2019
Entrez Id: 6023
Gene Symbol: RMRP
RMRP
0.010 Biomarker group BEFREE Cartilage-hair hypoplasia (CHH) is an autosomal recessive metaphyseal chondrodysplasia characterized by bone dysplasia and many other highly variable features. 31237961 2019
Entrez Id: 2239
Gene Symbol: GPC4
GPC4
0.010 Biomarker group BEFREE Phylogenetic analysis demonstrated that GPC4 is most closely related to GPC6, which is associated with a bone dysplasia that has a phenotypic overlap with Keipert syndrome. 30982611 2019
Entrez Id: 10082
Gene Symbol: GPC6
GPC6
0.010 Biomarker group BEFREE Phylogenetic analysis demonstrated that GPC4 is most closely related to GPC6, which is associated with a bone dysplasia that has a phenotypic overlap with Keipert syndrome. 30982611 2019
Entrez Id: 10312
Gene Symbol: TCIRG1
TCIRG1
0.010 GeneticVariation group BEFREE The finding that intermediate autosomal recessive osteopetrosis due to TCIRG1 splice site mutations can also present with platyspondyly further increases the molecular heterogeneity of dysosteosclerosis-like sclerosing bone dysplasias. 30537558 2019
Entrez Id: 7067
Gene Symbol: THRA
THRA
0.010 GeneticVariation group BEFREE Dominant-negative mutations of TRα cause resistance to thyroid hormone alpha (RTHα; OMIM 614450), characterized by excessive repression of T3 target genes leading to delayed skeletal development, growth retardation, and bone dysplasia. 30760120 2019
Entrez Id: 105371807
Gene Symbol: THRA1/BTR
THRA1/BTR
0.010 GeneticVariation group BEFREE Dominant-negative mutations of TRα cause resistance to thyroid hormone alpha (RTHα; OMIM 614450), characterized by excessive repression of T3 target genes leading to delayed skeletal development, growth retardation, and bone dysplasia. 30760120 2019
Entrez Id: 6137
Gene Symbol: RPL13
RPL13
0.010 GeneticVariation group BEFREE Here, we report one de novo missense variant and three de novo splice variants in RPL13, which encodes ribosomal protein RPL13 (also called eL13), in four unrelated individuals with a rare bone dysplasia causing severe short stature. 31630789 2019
Entrez Id: 4784
Gene Symbol: NFIX
NFIX
0.010 GeneticVariation group BEFREE The exception is provided by specific NFIX variants that act in a dominant negative manner, as these cause a recognizable entity with more severe cognitive impairment and marked bone dysplasia, Marshall-Smith syndrome. 31730271 2019
Entrez Id: 5130
Gene Symbol: PCYT1A
PCYT1A
0.010 GeneticVariation group BEFREE Pathogenic variants in genes involved in phospholipid metabolism, such as <i>PLCB4</i> and <i>PCYT1A,</i> are known to cause bone dysplasia with or without eye anomalies, which led us to select <i>PLCB3</i> as a strong candidate. 29122926 2018
Entrez Id: 2908
Gene Symbol: NR3C1
NR3C1
0.010 AlteredExpression group BEFREE In conclusion, glucocorticoid instead of caffeine inhibits bone IGF1 expression via glucocorticoid receptor and CCAAT and enhancer binding protein α and mediates the PCE-induced bone dysplasia and bone mass reduction in offspring fetal rats, which may contribute to osteoporosis susceptibility in adulthood. 30273601 2018
Entrez Id: 3479
Gene Symbol: IGF1
IGF1
0.010 AlteredExpression group BEFREE In conclusion, glucocorticoid instead of caffeine inhibits bone IGF1 expression via glucocorticoid receptor and CCAAT and enhancer binding protein α and mediates the PCE-induced bone dysplasia and bone mass reduction in offspring fetal rats, which may contribute to osteoporosis susceptibility in adulthood. 30273601 2018
Entrez Id: 5033
Gene Symbol: P4HA1
P4HA1
0.010 GeneticVariation group BEFREE We now report human bi-allelic P4HA1 mutations in a family with a congenital-onset disorder of connective tissue, manifesting as early-onset joint hypermobility, joint contractures, muscle weakness and bone dysplasia as well as high myopia, with evidence of clinical improvement of motor function over time in the surviving patient. 28419360 2017
Entrez Id: 3930
Gene Symbol: LBR
LBR
0.010 GeneticVariation group BEFREE Thus, in addition to Greenberg dysplasia (a perinatal lethal disorder), homozygosity or compound heterozygosity of mutations in LBR can result in a mild, spontaneously regressing bone dysplasia. 25348816 2015
Entrez Id: 5251
Gene Symbol: PHEX
PHEX
0.010 GeneticVariation group BEFREE In conclusion, mutations of COL2A1, PHEX and COMP gene are common for short stature due to bone dysplasia in outpatient clinics in pediatric endocrinology. 26377240 2015
Entrez Id: 55858
Gene Symbol: TMEM165
TMEM165
0.010 Biomarker group BEFREE Collectively, these findings highlight the utility of zebrafish to elucidate pathogenic mechanisms associated with glycosylation disorders and suggest that the cartilage and bone dysplasia manifested in TMEM165-CDG patients may stem from abnormal development of chondrocytes and osteoblasts. 25609749 2015
Entrez Id: 10908
Gene Symbol: PNPLA6
PNPLA6
0.010 GeneticVariation group BEFREE Many apparently well clinically defined syndromes are not distinct entities, but rather clusters on a continuous spectrum, like for the PNPLA6-associated diseases, extending from Boucher-Neuhauser syndrome via Gordon Holmes syndrome to spastic ataxia and pure hereditary spastic paraplegia; (2) Muscular/cardiac presentations; (3) Skin symptoms mostly represented by syndromic (neurocutaneous) and non syndromic ichthyosis; (4) Retinal dystrophies with syndromic and non syndromic retinitis pigmentosa, Leber congenital amaurosis, cone rod dystrophy, Stargardt disease; (5) Congenital bone dysplasia and segmental overgrowth disorders with congenital lipomatosis; (6) Liver presentations characterized mainly by transient neonatal cholestatic jaundice and non alcoholic liver steatosis with hypertriglyceridemia; and (7) Renal and immune presentations. 25413954 2015
Entrez Id: 1513
Gene Symbol: CTSK
CTSK
0.010 GeneticVariation group BEFREE The mutations in the CTSK gene can cause pycnodysostosis (OMIM 265800), a rare autosomal recessive bone dysplasia. 25731711 2015
Entrez Id: 3265
Gene Symbol: HRAS
HRAS
0.010 GeneticVariation group BEFREE Postzygotic HRAS mutation causing both keratinocytic epidermal nevus and thymoma and associated with bone dysplasia and hypophosphatemia due to elevated FGF23. 24243633 2014
Entrez Id: 5479
Gene Symbol: PPIB
PPIB
0.010 GeneticVariation group BEFREE Mutations in PPIB cause recessively inherited osteogenesis imperfecta type IX, a moderately severe to lethal bone dysplasia. 24968150 2014
Entrez Id: 1758
Gene Symbol: DMP1
DMP1
0.010 GeneticVariation group BEFREE Exome sequencing reveals a mutation in DMP1 in a family with familial sclerosing bone dysplasia. 25180662 2014
Entrez Id: 8074
Gene Symbol: FGF23
FGF23
0.010 GeneticVariation group BEFREE Postzygotic HRAS mutation causing both keratinocytic epidermal nevus and thymoma and associated with bone dysplasia and hypophosphatemia due to elevated FGF23. 24243633 2014
Entrez Id: 3351
Gene Symbol: HTR1B
HTR1B
0.010 Biomarker group BEFREE We could not find disease-causing coding variants in neither of the tested genes and therefore, we cannot provide support for an important function of TPH1 and HTR1B in the pathogenesis of sclerosing bone dysplasias in our tested patient cohort. 23563356 2013
Entrez Id: 7166
Gene Symbol: TPH1
TPH1
0.010 Biomarker group BEFREE We could not find disease-causing coding variants in neither of the tested genes and therefore, we cannot provide support for an important function of TPH1 and HTR1B in the pathogenesis of sclerosing bone dysplasias in our tested patient cohort. 23563356 2013
Entrez Id: 26123
Gene Symbol: TCTN3
TCTN3
0.010 GeneticVariation group BEFREE Here, by a combined approach of homozygozity mapping and exome ciliary sequencing, we identified truncating TCTN3 mutations as the cause of an extreme form of OFD associated with bone dysplasia, tibial defect, cystic kidneys, and brain anomalies (OFD IV, Mohr-Majewski syndrome). 22883145 2012