Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 5979
Gene Symbol: RET
RET
0.100 Biomarker disease BEFREE Forty-six such nodules were analyzed for RET activation by immunohistochemistry and, in selected cases, by reverse transcriptase-polymerase chain reaction performed on RNA extracted after laser capture microdissection (LCM) of the tumor foci with and without papillary carcinoma features and positive RET immunoreactivity. 12057919 2002
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.100 Biomarker disease BEFREE - To detect histologic and molecular differences separating NIFTP from follicular adenomas (FAs) and invasive carcinomas, particularly papillary carcinomas with extensive follicular growth (PTC-EFGs) and invasive encapsulated PTC-FV (IE-PTC-FV). 29582677 2018
Entrez Id: 5979
Gene Symbol: RET
RET
0.100 Biomarker disease BEFREE Therefore, the repression of CREB1 activity by CCDC6 has a critical function in the development of human thyroid papillary carcinomas carrying RET/PTC1 activation. 20498639 2010
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.100 Biomarker disease BEFREE Chromosomal rearrangements involving the RET gene, known as RET/PTC, are prevalent in thyroid papillary carcinomas from patients with radiation history. 15671095 2005
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 Biomarker disease BEFREE Rearrangements of ALK were found exclusively in v-raf murine sarcoma viral oncogene homolog B (BRAF) WT papillary carcinomas. 25527510 2015
Entrez Id: 2158
Gene Symbol: F9
F9
0.100 Biomarker disease BEFREE RET/PTC oncogene activation occurs in about 20% of human thyroid papillary carcinomas. 7566982 1995
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.100 GeneticVariation disease BEFREE The identification of ret/PTC gene rearrangements refined the diagnosis of PC in 9 of 15 specimens (60%) that would otherwise have been considered indeterminate and in 2 of 6 that were considered insufficient for cytological diagnosis. 11344225 2001
Entrez Id: 2158
Gene Symbol: F9
F9
0.100 Biomarker disease BEFREE In fact, it has been demonstrated that: a) RET/PTC is an early event in the process of thyroid carcinogenesis and has a critical role in the generation of the papillary carcinoma; b) RET/PTC activation is essentially restricted to the papillary histotype and to the Hürthle thyroid tumors; c) its incidence increases after exposure to radiations. 17891236 2007
Entrez Id: 5979
Gene Symbol: RET
RET
0.100 GeneticVariation disease BEFREE We and others have shown that RET-PTC3 rearrangements are associated with the solid morphology seen in these short latency tumours, while classical papillary carcinomas more often show RET-PTC1 rearrangements. 15150580 2004
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE A high percentage of both melanomas and papillary carcinomas of the thyroid harbors a recurrent mutation (i.e., BRAF(V600E) ) in the BRAF oncogene. 24574369 2014
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE Papillary carcinomas of the thyroid with papillary growth and areas of follicular growth have a high frequency of BRAF mutations. 19738460 2009
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE Follicular variant of papillary carcinoma: reproducibility of histologic diagnosis and utility of HBME-1 immunohistochemistry and BRAF mutational analysis as diagnostic adjuncts. 20042852 2010
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE One anaplastic carcinoma and one papillary carcinoma showed p53 gene mutations in exons 5 and 8, respectively. 8630516 1996
Entrez Id: 5726
Gene Symbol: TAS2R38
TAS2R38
0.100 GeneticVariation disease BEFREE Papillary carcinomas show frequently a specific gene rearrangement which gives rise to the formation of several types of so-called RET/PTC chimeric genes. 10834397 2000
Entrez Id: 5979
Gene Symbol: RET
RET
0.100 GeneticVariation disease BEFREE Furthermore, the PTC/retTPC chimeric transcripts were detected in two PCs with the rearrangement by reverse transcription polymerase chain reaction. 1620547 1992
Entrez Id: 2158
Gene Symbol: F9
F9
0.100 GeneticVariation disease BEFREE The identification of ret/PTC gene rearrangements refined the diagnosis of PC in 9 of 15 specimens (60%) that would otherwise have been considered indeterminate and in 2 of 6 that were considered insufficient for cytological diagnosis. 11344225 2001
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE In this cohort, correlation between BRAF mutations and various clinicopathological parameters in 101 papillary carcinomas did not reveal any association with age at diagnosis, sex, tumour size, histological variants of PTC, multicentricity, cervical lymph node metastases, extrathyroidal invasion, distant metastases and clinical stage. 16181240 2005
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.100 GeneticVariation disease BEFREE These data demonstrate that as opposed to the few reports on tumors arising after therapeutic external irradiation, ras mutations are not primary events in the development of post-Chernobyl thyroid papillary carcinomas. p53 mutations do not appear to be important in the development of these tumors, but may in some cases have a role in progression to a more aggressive phenotype that has not yet fully manifested in these pediatric neoplasms. 8761289 1996
Entrez Id: 8030
Gene Symbol: CCDC6
CCDC6
0.100 Biomarker disease BEFREE RET/PTC oncogene activation occurs in about 20% of human thyroid papillary carcinomas. 7566982 1995
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.100 Biomarker disease BEFREE RET/PTC oncogene activation occurs in about 20% of human thyroid papillary carcinomas. 7566982 1995
Entrez Id: 5726
Gene Symbol: TAS2R38
TAS2R38
0.100 Biomarker disease BEFREE The frequency, if we consider exclusively the papillary carcinomas, is in both cases 12%; (b) show that the TRK oncogene plays a role in the development of a minority of radiation-associated papillary thyroid carcinomas but not in adenomas; and (c) confirm that RET/PTC rearrangements are the major genetic alteration associated with ionizing radiation-induced thyroid tumorigenesis. 10646882 2000
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.100 GeneticVariation disease BEFREE The present data do not support a major geographic difference in the prevalence of ret/PTC rearrangements in papillary carcinomas between Japan, the United States, and Italy. 9669285 1998
Entrez Id: 5979
Gene Symbol: RET
RET
0.100 GeneticVariation disease BEFREE For the sake of the discussion, well-differentiated carcinomas were divided into two main morphologic types: papillary carcinoma (classic and most variants) displaying BRAFV600E mutations and RET/papillary thyroid carcinoma rearrangements and the group of follicular patterned carcinomas that encompasses follicular carcinoma and the encapsulated form of follicular variant of papillary carcinoma, displaying RAS mutations and PAX8/PPARγ rearrangement. 26510840 2016
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.100 GeneticVariation disease BEFREE In summary, BRAF V600E mutation was occasionally observed in anaplastic carcinomas with papillary carcinoma, and the low frequency of BRAF V600E mutation in anaplastic carcinoma was thought to be due to the low frequency of anaplastic carcinomas with papillary carcinoma. 17453004 2007
Entrez Id: 5727
Gene Symbol: PTCH1
PTCH1
0.100 GeneticVariation disease BEFREE Prevalence of RET/PTC rearrangements in thyroid papillary carcinomas: effects of the detection methods and genetic heterogeneity. 16772343 2006