Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1776
Gene Symbol: DNASE1L3
DNASE1L3
0.010 Biomarker group BEFREE There is no reported instance of a malformed child born to a woman who ingested pure LSD; there are six cases of malformation associated with exposure to illicit LSD, four of which have similar limb defects. 4994465 1971
Entrez Id: 50964
Gene Symbol: SOST
SOST
0.010 Biomarker group BEFREE Sclerosteosis is a unique autosomal recessive condition in which skeletal overgrowth is associated with syndactyly and digital malformation. 1259284 1976
Entrez Id: 257
Gene Symbol: ALX3
ALX3
0.020 Biomarker group BEFREE The presence of consanguinity in all individuals affected with a variety of manifestations of FND suggests a genetic mechanism for this malformation. 7363499 1980
Entrez Id: 7008
Gene Symbol: TEF
TEF
0.010 Biomarker group BEFREE Esophageal atresia with or without tracheoesophageal fistula (EA +/- TEF) usually occurs sporadically either as an isolated malformation or in conjunction with other congenital anomalies. 6714984 1984
Entrez Id: 1717
Gene Symbol: DHCR7
DHCR7
0.100 Biomarker group BEFREE The discovery by G. Stephen Tint and his co-workers of the apparent 7-DHC reductase deficiency makes the RSH (Smith-Lemli-Opitz) syndrome the first true metabolic malformation syndrome. 7632194 1994
Entrez Id: 7490
Gene Symbol: WT1
WT1
0.020 GeneticVariation group BEFREE The expression of the WT1 gene in pleural and abdominal mesothelium and the occurrence of diaphragmatic hernia in transgenic mice with a homozygous WT1 deletion strongly suggests that the diaphragmatic hernia in this patient is part of the malformation pattern caused by WT1 mutations. 7645607 1995
Entrez Id: 2252
Gene Symbol: FGF7
FGF7
0.010 Biomarker group BEFREE Culturing mouse fetal lung explants in the presence of recombinant human KGF also disrupted branching morphogenesis and resulted in similar cystic malformation of the lung. 8618921 1995
Entrez Id: 1717
Gene Symbol: DHCR7
DHCR7
0.100 GeneticVariation group BEFREE The RSH/Smith-Lemli-Opitz syndrome (RSH/SLOS) is an autosomal recessive malformation syndrome associated with increased levels of 7-dehydro-cholesterol (7-DHC) and a defect of cholesterol biosynthesis at the level of 3 beta-hydroxy-steroid-delta7-reductase (7-DHC reductase). 8989473 1996
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
0.020 Biomarker group BEFREE Other signs of VCFS should be looked for in children with cerebellar malformation. 8870617 1996
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
0.020 Biomarker group BEFREE These results strongly support the hypothesis that haploinsufficiency of a gene or genes within 10p (the DGSII locus) can cause the DGS/VCFS spectrum of malformation. 8696341 1996
Entrez Id: 2261
Gene Symbol: FGFR3
FGFR3
0.020 AlteredExpression group BEFREE These results together with our earlier observation that achondroplasia results from constitutive activation of the related receptor FGFR3, leads to the prediction that other malformation syndromes attributed to FGFRs, such as Pfeiffer syndrome and Thanatophoric dysplasia, also arise from constitutive receptor activation. 8755573 1996
Entrez Id: 6910
Gene Symbol: TBX5
TBX5
0.040 GeneticVariation group BEFREE Mutations in human TBX5 [corrected] cause limb and cardiac malformation in Holt-Oram syndrome. 8988165 1997
Entrez Id: 1717
Gene Symbol: DHCR7
DHCR7
0.100 GeneticVariation group BEFREE The Smith-Lemli-Opitz syndrome (SLOS; also known as "RSH syndrome" [MIM 270400]) is an autosomal recessive multiple malformation syndrome due to a defect in cholesterol biosynthesis. 9634533 1998
Entrez Id: 8481
Gene Symbol: OFD1
OFD1
0.030 Biomarker group BEFREE We review the literature on CNS anomalies in OFD syndromes and stress the difficulties in genetic counseling and functional prognosis for children of OFD 1 female carriers prenatally diagnosed with a malformation of the brain. 9482645 1998
Entrez Id: 4964
Gene Symbol: OFC2
OFC2
0.010 Biomarker group BEFREE A locus in 2p13-p14 (OFC2), in addition to that mapped in 6p23, is involved in nonsyndromic familial orofacial cleft malformation. 9676424 1998
Entrez Id: 1717
Gene Symbol: DHCR7
DHCR7
0.100 GeneticVariation group BEFREE Now known as a Garrodian inborn error caused by the homozygous state of many different autosomal recessive mutations of the 7-dehydrocholesterol reductase gene leading to deficient conversion of 7-dehydrocholesterol to cholesterol, the RSH (so-called Smith-Lemli-Opitz) syndrome has become a paradigmatic metabolic malformation syndrome in a pathway that also involves cause and pathogenesis of desmosterolosis, two forms of the Conradi-Hünermann-Happle type chondodysplasia punctata and its mouse homologs, and the Greenberg "moth-eaten" skeletal dysplasia and the CHILD syndrome. 10439210 1999
Entrez Id: 5048
Gene Symbol: PAFAH1B1
PAFAH1B1
0.080 GeneticVariation group BEFREE We found consistent differences in the gyral patterns, with the malformation more severe posteriorly in individuals with LIS1 mutations and more severe anteriorly in individuals with XLIS mutations. 10430413 1999
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.070 GeneticVariation group BEFREE Mutations of the human PAX6 gene underlie aniridia (congenital absence of the iris), a rare dominant malformation of the eye. 9931324 1999
Entrez Id: 1641
Gene Symbol: DCX
DCX
0.040 GeneticVariation group BEFREE We found consistent differences in the gyral patterns, with the malformation more severe posteriorly in individuals with LIS1 mutations and more severe anteriorly in individuals with XLIS mutations. 10430413 1999
Entrez Id: 5076
Gene Symbol: PAX2
PAX2
0.040 GeneticVariation group BEFREE The homoguanine tract in PAX2 is a hot spot for spontaneous expansion or contraction mutations and demonstrates the importance of homonucleotide tract mutations in human malformation syndromes. 10533062 1999
Entrez Id: 4867
Gene Symbol: NPHP1
NPHP1
0.020 GeneticVariation group BEFREE Review of this disorder and related syndromes suggests that (1) hypoplasia of the cerebellar vermis in Joubert syndrome is frequently associated with a complex brain stem malformation represented as the "molar tooth sign" on magnetic resonance imaging, (2) the "molar tooth sign" could be present in association with the Dandy-Walker malformation and occipital encephalocele, (3) cerebellar hypoplasia is present in conditions related to Joubert syndrome such as Arima syndrome; Senior-Loken syndrome; cerebellar vermian hypoplasia, oligophrenia, congenital ataxia, coloboma, and hepatic fibrosis syndrome; and juvenile nephronophthisis due to NPH1 mutations, and (4) the brainstem-vermis malformation spectrum is probably caused by at least two and probably several genetic loci. 10511339 1999
Entrez Id: 10085
Gene Symbol: EDIL3
EDIL3
0.010 GeneticVariation group BEFREE Terminal deletion, del(1)(p36.3), detected through screening for terminal deletions in patients with unclassified malformation syndromes. 10215549 1999
Entrez Id: 30010
Gene Symbol: NXPH1
NXPH1
0.010 GeneticVariation group BEFREE Review of this disorder and related syndromes suggests that (1) hypoplasia of the cerebellar vermis in Joubert syndrome is frequently associated with a complex brain stem malformation represented as the "molar tooth sign" on magnetic resonance imaging, (2) the "molar tooth sign" could be present in association with the Dandy-Walker malformation and occipital encephalocele, (3) cerebellar hypoplasia is present in conditions related to Joubert syndrome such as Arima syndrome; Senior-Loken syndrome; cerebellar vermian hypoplasia, oligophrenia, congenital ataxia, coloboma, and hepatic fibrosis syndrome; and juvenile nephronophthisis due to NPH1 mutations, and (4) the brainstem-vermis malformation spectrum is probably caused by at least two and probably several genetic loci. 10511339 1999
Entrez Id: 93
Gene Symbol: ACVR2B
ACVR2B
0.010 GeneticVariation group BEFREE We conclude that ACVR2B mutations are present only rarely among human LR axis malformation cases. 9916847 1999
Entrez Id: 596
Gene Symbol: BCL2
BCL2
0.010 Biomarker group BEFREE Bcl-2 is crucial for normal development in the kidney, with a deficiency in Bcl-2 producing such malformation that renal failure and death result. 10361261 1999