Disease: Primary malignant neoplasm
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs10069690
TERT
0.595 0.560 5 1279675 intron variant C/T snv 0.36 53
rs10505477
CASC8 ; PCAT1 ; POU5F1B
0.658 0.400 8 127395198 intron variant A/G snv 0.40 31
rs10680577
RAB4B-EGLN2 ; EGLN2
0.776 0.160 19 40798690 intron variant -/TACT delins 10
rs10937405
TP63
0.807 0.080 3 189665394 intron variant C/T snv 0.38 9
rs11568820
VDR
0.672 0.480 12 47908762 intron variant C/T snv 0.38 27
rs12914385
CHRNA3
0.790 0.160 15 78606381 intron variant C/A;T snv 18
rs13042395
SLC52A3
0.752 0.160 20 773867 intron variant C/T snv 5.9E-02 13
rs1412125
HMGB1
0.724 0.360 13 30467458 intron variant C/G;T snv 17
rs1447295
CASC8
0.658 0.400 8 127472793 intron variant A/C;T snv 29
rs1682111
ACYP2
0.742 0.240 2 54200842 intron variant A/T snv 0.56 13
rs16901979
PCAT1 ; CASC19
0.724 0.480 8 127112671 intron variant C/A snv 0.16 17
rs1800469
B9D2 ; TGFB1
0.547 0.760 19 41354391 intron variant A/G snv 0.69 78
rs1800896
IL19 ; IL10
0.507 0.800 1 206773552 intron variant T/C snv 0.41 113
rs1899663
HOTAIR
0.683 0.280 12 53967210 intron variant C/A snv 0.28 22
rs2075686
TMEM167A ; XRCC4
0.742 0.240 5 83076927 intron variant C/T snv 1.7E-02 13
rs2107425
MRPL23 ; H19
0.732 0.280 11 1999845 intron variant C/T snv 16
rs2242652
TERT
0.724 0.400 5 1279913 intron variant G/A snv 0.18 16
rs2267437
DESI1 ; XRCC6
0.724 0.320 22 41620695 intron variant C/A;G snv 19
rs2279744
MDM2
0.605 0.640 12 68808800 intron variant T/G snv 0.31 48
rs2352028
GPC5
0.851 0.080 13 91792975 intron variant C/G;T snv 6
rs25406
PCNA-AS1 ; PCNA
0.807 0.120 20 5118990 intron variant G/A snv 0.41 8
rs28360071
XRCC4
0.708 0.240 5 83142293 intron variant GATGAGGAAACTAACTCTCAGTGGTGTTTA/- delins 0.48 18
rs28399433
CYP2A6
0.827 0.200 19 40850474 intron variant A/C;G;T snv 0.10; 4.4E-06 7
rs2853676
TERT
0.667 0.560 5 1288432 intron variant T/A;C snv 29
rs3212961
ERCC1
0.827 0.200 19 45419065 intron variant G/A;T snv 1.9E-04; 0.20 7