Gene Disease Score gda Association Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 10082
Gene Symbol: GPC6
GPC6
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation GWASDB Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects. 22993228

2013

Entrez Id: 7421
Gene Symbol: VDR
VDR
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Tryptophan alleles in COL9A2 and COL9A3 have been shown to be associated with lumbar disc disease in the Finnish population, and polymorphisms in the vitamin D receptor gene (VDR) (FokI and TaqI), the matrix metalloproteinase-3 gene (MMP-3) and an aggrecan gene (AGC1) VNTR have been reported to be associated with disc degeneration. 14644861

2003

Entrez Id: 7421
Gene Symbol: VDR
VDR
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Polymorphisms in VDR gene were previously associated with DD process, however with conflicting results. 29467039

2018

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE Polymorphisms in several structural and inflammatory genes like collagens, aggrecan, matrix metalloproteinases are associated with the risk of disc degeneration. 30288688

2018

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE Apoptosis in nucleus pulposus (NP) cells which induced by TNF-α has been widely known to associate with the disc degeneration. 31322007

2019

Entrez Id: 3553
Gene Symbol: IL1B
IL1B
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE The NLRP3/caspase-1/IL-1β axis is active in cartilaginous endplates of patients with Modic changes and inflammatory cascades can exacerbate the cartilaginous endplate degeneration which may act as a trigger for intervertebral disc degeneration and low back pain. 27146654

2016

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE LIM mineralization protein-1 suppresses TNF-α induced intervertebral disc degeneration by maintaining nucleus pulposus extracellular matrix production and inhibiting matrix metalloproteinases expression. 25336289

2015

Entrez Id: 64478
Gene Symbol: CSMD1
CSMD1
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation GWASDB Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects. 22993228

2013

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 AlteredExpression BEFREE We found that serglycin expression increased with increasing disc degeneration both in vivo and in vitro, and also increased with exposure in vitro to IL-1ß and TNF-α. 29319363

2018

Entrez Id: 7421
Gene Symbol: VDR
VDR
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Association of vitamin D receptor gene polymorphisms with disc degeneration. 31768839

2020

Entrez Id: 64478
Gene Symbol: CSMD1
CSMD1
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation GWASCAT Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects. 22993228

2013

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE Urolithin A Inhibits the Catabolic Effect of TNFα on Nucleus Pulposus Cell and Alleviates Intervertebral Disc Degeneration <i>in vivo</i>. 30283339

2018

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Tryptophan alleles in COL9A2 and COL9A3 have been shown to be associated with lumbar disc disease in the Finnish population, and polymorphisms in the vitamin D receptor gene (VDR) (FokI and TaqI), the matrix metalloproteinase-3 gene (MMP-3) and an aggrecan gene (AGC1) VNTR have been reported to be associated with disc degeneration. 14644861

2003

Entrez Id: 3569
Gene Symbol: IL6
IL6
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE Mechanism of microRNA-146a-mediated IL-6/STAT3 signaling in lumbar intervertebral disc degeneration. 28810568

2017

Entrez Id: 7421
Gene Symbol: VDR
VDR
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Degeneration scores were significantly worse in cases with COL1A1 Sp1, COL9a3 Trp3, and VDR TaqI mutations; however, COL9a2 Trp2 mutation was not associated with a difference in the severity of disc degeneration. 26342701

2015

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE In degeneration, there was evidence of a loss of aggrecan synthesis, which may contribute to the pathogenesis of disc degeneration. 11950957

2002

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE Within this scope, we discuss the current knowledge concerning the structure and function of aggrecan in intervertebral disc degeneration. 29992840

2019

Entrez Id: 7124
Gene Symbol: TNF
TNF
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE TNFα is involved in intervertebral disc degeneration (IDD) and plays a key role. 29992506

2018

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE To determine the expression of ADAMTS-4, a metalloproteinase capable of digesting aggrecan, and its role in herniated lumbar intervertebral disc degradation. 16741450

2006

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Genetic polymorphisms in 20 genes have been analyzed in association with DD, including vitamin D receptor, growth differentiation factor 5 (GDF5), aggrecan, collagen Types I, IX, and XI, fibronectin, hyaluronan and proteoglycan link protein 1 (HAPLN1), thrombospondin, cartilage intermediate layer protein (CILP), asporin, MMP1, 2, and 3, parkinson protein 2, E3 ubiquitin protein ligase (PARK2), proteosome subunit β type 9 (PSMB9), tissue inhibitor of metalloproteinase (TIMP), cyclooxygenase-2 (COX2), and IL1α, IL1β, and IL6. 23537453

2013

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 AlteredExpression BEFREE An in vitro model of disc degeneration using human nucleus pulposus cells (hNPCs) and ex vivo culture of mouse intervertebral discs organs under the actions of inflammatory cytokines were used, and the expression of Col II and aggrecan in hNPCs were detected by semi-quantitative western blot analysis, and the mRNA expression of the genes than encode Col II and aggrecan were detected by reverse transcription‑quantitative polymerase chain reaction (RT-qPCR). 29207013

2018

Entrez Id: 176
Gene Symbol: ACAN
ACAN
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Aggrecan fragments have been found in human degenerated discs, and an association between the aggrecan VNTR polymorphism and intervertebral disc degeneration has been previously reported in middle-aged Finnish men. 20505571

2010

Entrez Id: 3553
Gene Symbol: IL1B
IL1B
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 Biomarker BEFREE This in vitro study has shown that the use of ex vivo gene transfer to degenerate disc tissue is a feasible therapy for the inhibition of IL-1-mediated events during disc degeneration. 16436110

2006

Entrez Id: 3553
Gene Symbol: IL1B
IL1B
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 AlteredExpression BEFREE IL-1β and hypoxia synergetically contributed to the catabolic effects of the nucleus pulposus cells by upregulating the expression of MMP-3, MMP-13, ADAMTS-4 and ADAMTS-5 through the activation of NF-κB signaling pathway, indicating that the NF-κB signaling pathway is a key mediator of intervertebral disc degeneration. 30468453

2018

Entrez Id: 7421
Gene Symbol: VDR
VDR
CUI: C0158266
Disease: Intervertebral Disc Degeneration
Intervertebral Disc Degeneration
0.100 GeneticVariation BEFREE Vitamin D receptor gene and aggrecan gene polymorphisms and the risk of intervertebral disc degeneration - a meta-analysis. 23209686

2012