Source: ALL

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs6761637
rs6761637
MARCO
1.000 0.080 2 118981487 missense variant T/C snv 8.3E-02 0.13
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2011 2018
dbSNP: rs7095891
rs7095891
MBL2
0.882 0.120 10 52771701 upstream gene variant G/A snv 0.30
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2019 2019
dbSNP: rs7096206
rs7096206
MBL2
0.708 0.480 10 52771925 upstream gene variant G/A;C;T snv
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 0.500 2 2014 2019
dbSNP: rs779826162
rs779826162
TLR1
0.925 0.080 4 38796574 missense variant C/T snv 2.0E-05 1.4E-05
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2010 2010
dbSNP: rs897200
rs897200
STAT4
0.851 0.280 2 191153045 upstream gene variant T/C snv 0.54
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2014 2018
dbSNP: rs9939609
rs9939609
FTO
0.559 0.720 16 53786615 intron variant T/A snv 0.41
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2014 2017
dbSNP: rs10065172
rs10065172
IRGM
0.790 0.200 5 150848436 synonymous variant C/T snv 0.17 0.21
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1010
rs1010
VAMP8
0.807 0.120 2 85581859 3 prime UTR variant T/C;G snv
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs10208770
rs10208770
SP110
1.000 0.080 2 230170151 intron variant T/G snv 0.14
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2014 2014
dbSNP: rs1041981
rs1041981
LTA ; LOC100287329
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2012 2012
dbSNP: rs10421768
rs10421768
HAMP
0.807 0.120 19 35281996 intron variant A/G snv 0.21
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1042713
rs1042713
ADRB2
0.576 0.800 5 148826877 missense variant G/A snv 0.42 0.43
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1042714
rs1042714
ADRB2
0.597 0.640 5 148826910 stop gained G/C;T snv 0.68
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs10498244
rs10498244
SP110
1.000 0.080 2 230173117 non coding transcript exon variant T/C snv 0.26
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2014 2014
dbSNP: rs10499859
rs10499859
CD36
0.925 0.120 7 80629494 intron variant A/G snv 0.46
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1050504
rs1050504
NSMAF
1.000 0.080 8 58583857 3 prime UTR variant C/T snv 0.24
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1057141
rs1057141
PSMB9 ; TAP1
1.000 0.080 6 32850997 missense variant T/C snv 0.20 0.20
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016
dbSNP: rs10759931
rs10759931 		0.790 0.360 9 117701869 upstream gene variant G/A;T snv
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2015 2015
dbSNP: rs10759932
rs10759932
TLR4
0.732 0.560 9 117702866 upstream gene variant T/C snv 0.18
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs10841845
rs10841845
CLEC4E
0.925 0.200 12 8533837 3 prime UTR variant A/G snv 0.28
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs10841847
rs10841847
CLEC4E
1.000 0.080 12 8535216 intron variant A/G snv 0.58
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs10995271
rs10995271 		0.776 0.280 10 62678726 downstream gene variant G/C snv 0.32
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2014 2014
dbSNP: rs11168287
rs11168287
VDR
0.882 0.160 12 47891631 intron variant G/A snv 0.56
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016
dbSNP: rs11209026
rs11209026
IL23R
0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2012 2012
dbSNP: rs1135216
rs1135216
PSMB9 ; TAP1
0.807 0.200 6 32847198 missense variant T/C snv 0.17 0.18
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016