Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 2263
Gene Symbol: FGFR2
FGFR2
0.100 Biomarker group BEFREE Patients with hypospadias consistently showed aberrant immunohistochemical staining patterns for FGF8/FGF10/FGFR2 in epidermis and dermis compared to patients without penile malformation (p < 0.01 for all markers). qPCR displayed no difference in expression levels on mRNA level (FGFR2 p = 0.44, FGF8 p = 0.77, and FGF10 p = 0.17) comparing normal foreskin with foreskin from patients with hypospadias.Figure. 31718875 2019
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.100 GeneticVariation group BEFREE Therefore, this meta-analysis explores the association between MTHFR polymorphisms and birth defects and adverse pregnancy outcomes. 30474229 2019
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 Biomarker group BEFREE Non-syndromic cleft lip with or without cleft palate (NSCL/P) is one of common birth defects in China, with genetic and environmental components contributing to the etiology. 30769929 2019
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 Biomarker group BEFREE Non-syndromic cleft lip, with or without cleft palate (NSCL/P), is a common craniofacial birth defect, the risk of which is influenced from multiple genetic loci. 31132300 2019
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.100 GeneticVariation group BEFREE CHARGE syndrome is a congenital disorder with multiple malformations in the craniofacial structures, and cardiovascular and genital systems, which are mainly affected by neural crest defects caused by loss-of-function mutations within chromodomain helicase DNA-binding protein 7 (CHD7). 31464029 2019
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.100 GeneticVariation group BEFREE Genetic testing for HNF1B mutations should be considered for patients with renal malformations, especially when associated with other organ involvement. 31131422 2019
Entrez Id: 6910
Gene Symbol: TBX5
TBX5
0.100 GeneticVariation group BEFREE Eleven variants in SALL4 and TBX5 were previously associated with cardiac diseases or malformations; however, in TE sample there was no association. 31388035 2019
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.100 GeneticVariation group BEFREE Establishment of a human iPSC line (SDQLCHi010-A) from a patient with optic nerve malformation carrying a heterozygous mutation in PAX6 gene. 31707209 2019
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 Biomarker group BEFREE Nonsyndromic cleft lip with or without cleft palate (NSCL/P) is a common birth defect. 30848863 2019
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
0.100 Biomarker group BEFREE In this study the TGA/Chemometric test was applied for diagnosis of a case of congenital hemolytic anemia for which the common first level diagnostic tests were not able to find the erythrocyte congenital defect. 31632985 2019
Entrez Id: 55636
Gene Symbol: CHD7
CHD7
0.100 GeneticVariation group BEFREE Based on a relatively unbiased neonatal cohort, we concluded that CHARGE syndrome and CHD7 gene variants should be suspected in newborns who have feeding difficulty, and one or more malformations. 31146700 2019
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.100 GeneticVariation group BEFREE Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES) is an autosomal dominant entity characterized by eyelid malformations and caused by mutations in the forkhead box L2 (FOXL2) gene. 31048069 2019
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 Biomarker group BEFREE Non-syndromic cleft lip with or without palate (NSCL/P) is a common congenital malformation worldwide, with complex etiology. 29211286 2018
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 Biomarker group BEFREE Our observation that the impact of genetic variants on NSCL/P risk differs for males and females may further our understanding of the genetic architecture of NSCL/P and the sex differences underlying clefts and other birth defects. 30277614 2018
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 Biomarker group BEFREE Nonsyndromic cleft lip with or without cleft palate (NSCL/P) is a birth defect for which several genes susceptibility genes been proposed. 29694940 2018
Entrez Id: 3342
Gene Symbol: HTC2
HTC2
0.100 Biomarker group BEFREE Factors associated with pathological results in array-CGH were a family history of GDD/ID (OR = 12.1), congenital malformations (OR = 5.33), having more than 3 facial dysmorphic features (OR = 20.9), and hypotonia (OR = 3.25). 27157524 2018
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.100 GeneticVariation group BEFREE An association between MTHFR polymorphisms and congenital malformations and chromosomal abnormalities was observed. 30258247 2018
Entrez Id: 4524
Gene Symbol: MTHFR
MTHFR
0.100 GeneticVariation group BEFREE We evaluated five single-nucleotide polymorphisms (SNPs) in genes related to folic acid metabolism: methylenetetrahydrofolate reductase (MTHFR C677T and A1298C), solute carrier family 19, member 1 (SLC19A1 G80A), methionine synthase (MTR A2576G), and methionine synthase reductase (MTRR A66G), as risk factors for CTDs including various types of malformation, in a total of 193 mothers with CTD-affected offspring and 234 healthy controls in a Chinese population. 30165839 2018
Entrez Id: 3342
Gene Symbol: HTC2
HTC2
0.100 GeneticVariation group BEFREE Prematurity, ventricular septal defect and dysmorphisms are independent predictors of pathogenic copy number variants: a retrospective study on array-CGH results and phenotypical features of 293 children with neurodevelopmental disorders and/or multiple congenital anomalies. 29523172 2018
Entrez Id: 6899
Gene Symbol: TBX1
TBX1
0.100 Biomarker group BEFREE For example, haploinsufficiency of TBX1 is responsible for many structural malformations in DiGeorge syndrome caused by a chromosome 22q11.2 deletion. 29726930 2018
Entrez Id: 6223
Gene Symbol: RPS19
RPS19
0.100 GeneticVariation group BEFREE Patients with RPS19 mutations had the fewest number of defects, while patients with RPL5 had the greatest number of birth defects. 29044489 2018
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 GeneticVariation group BEFREE The isolated type of orofacial cleft, termed non-syndromic cleft lip with or without cleft palate (NSCL/P), is the second most common birth defect in China, with Asians having the highest incidence in the world. 30578914 2018
Entrez Id: 6928
Gene Symbol: HNF1B
HNF1B
0.100 GeneticVariation group BEFREE Structural malformation of male urogenital tract is rare in MODY 5, even rarer is asthenospermia. 29574432 2018
Entrez Id: 4807
Gene Symbol: NHLH1
NHLH1
0.100 GeneticVariation group BEFREE Non-syndromic cleft lip with or without cleft palate (NSCL/P) are the most common human congenital birth defects with a complex etiology. 30024657 2018
Entrez Id: 668
Gene Symbol: FOXL2
FOXL2
0.100 GeneticVariation group BEFREE Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES) is a rare autosomal dominant disease caused by FOXL2 gene mutations, and it is clinically characterized by an eyelid malformation associated (type I) or not (type II) with premature ovarian failure (POF). 29339661 2018