Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 Biomarker group BEFREE The spectrum of NOTCH1-associated malformations is widened. 31111652 2019
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 Biomarker group BEFREE In addition to showing that extracranial AVMs demonstrate interrupted elastin and that AVMs and LMs demonstrate abnormal α-smooth muscle actin just as brain AVMS do, our results demonstrate that NOTCH1, 2, 3 and 4 proteins are overexpressed to varying degrees in both the endothelial and mural lining of the malformed vessels in all types of malformations. 30573741 2018
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE The penetrance is high; a cardiovascular malformation was found in 75% of NOTCH1 mutation carriers. 26820064 2016
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE We identified novel co-segregating pathogenic mutations in NOTCH1 associated with left and right-sided cardiac malformations in three independent families with a total of 15 affected individuals. 27760138 2016
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE In the TOF patients, we found four copy number gains affecting three genes, of which two are important regulators of heart development (NOTCH1, ISL1) and one is located in a region associated with cardiac malformations (PRODH at 22q11). 24400131 2014
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 Biomarker group BEFREE These findings suggest that patient-specific iPS cells may provide molecular insights into complex transcriptional and epigenetic mechanisms, at least in part, through combinatorial expression of NKX2-5, HAND1, and NOTCH1 that coordinately contribute to cardiac malformations in HLHS. 25050861 2014
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE We recently identified missense variants in the NOTCH1 receptor in patients with diverse left ventricular outflow tract (LVOT) malformations (NOTCH1(G661S) and NOTCH1(A683T)) that reduce ligand-induced Notch signaling. 20951801 2011
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 Biomarker group BEFREE Males with the deletion of β-catenin or Notch1 in the gubernacular ligament demonstrated abnormal development. 21147849 2011
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE NOTCH1 mutations in individuals with left ventricular outflow tract malformations reduce ligand-induced signaling. 18593716 2008
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 Biomarker group BEFREE Dll3 and Notch1 genetic interactions model axial segmental and craniofacial malformations of human birth defects. 17849441 2007
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 Biomarker group CTD_human Dll3 and Notch1 genetic interactions model axial segmental and craniofacial malformations of human birth defects. 17849441 2007
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE This finding was supported by the discovery of a NOTCH1 frameshift mutation in an unrelated family with similar aortic valve disease, suggesting that NOTCH1 haploinsufficiency was a genetic cause of aortic valve malformations and calcification. 16601454 2006
Entrez Id: 4851
Gene Symbol: NOTCH1
NOTCH1
0.400 GeneticVariation group BEFREE These results suggest that NOTCH1 mutations cause an early developmental defect in the aortic valve and a later de-repression of calcium deposition that causes progressive aortic valve disease. 16025100 2005
Entrez Id: 6299
Gene Symbol: SALL1
SALL1
0.350 AlteredExpression group BEFREE Extinguished SALL1 expression and marked dysgenesis of nephron structures were observed in the rudimentary kidney tissue of SALL1-KO foetuses. 31142767 2019
Entrez Id: 6495
Gene Symbol: SIX1
SIX1
0.350 Biomarker group BEFREE Genetically inactivating 1 allele of either Ednra or Bmp4 significantly reduced the penetrance of maxillary malformation in both Six1 <sup>-/-</sup> and Six1 <sup>-/-</sup> Six2 <sup>+/-</sup> embryos, indicating that Six1 and Six2 regulate both endothelin and bone morphogenetic protein-4 signaling pathways to pattern the facial structures. 30905259 2019
Entrez Id: 6495
Gene Symbol: SIX1
SIX1
0.350 GeneticVariation group BEFREE In conclusion, we show that a de novo variant in SIX1 in a patient with sensorineural hearing loss leads to cochleovestibular malformations and abnormalities of the CVN, without any other abnormalities. 31595699 2019
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.350 Biomarker group BEFREE EYA1 and GLI3 are involved in the Sonic Hedgehog transcriptional network and GLI3 seems to be involved in human foregut malformations. 29257230 2018
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.350 Biomarker group BEFREE Previous studies indicated that transcriptional complex SIX1/EYA1 may contribute to SHF development, and SIX1/EYA1 knockout mice exhibited a series of conotruncal malformations. 29043394 2018
Entrez Id: 6495
Gene Symbol: SIX1
SIX1
0.350 AlteredExpression group BEFREE Nevertheless, further studies are necessary to understand if altered SIX1 expression may play a role in human development of kidney and urinary tract congenital anomalies. 24899122 2014
Entrez Id: 6299
Gene Symbol: SALL1
SALL1
0.350 GeneticVariation group BEFREE Townes-Brocks syndrome is a recognizable variable pattern of malformation caused by mutations to the SALL1 gene located on chromosome 16q12.1. 23894113 2013
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.350 GeneticVariation group BEFREE We demonstrate that murine mutation of both Six1 and Eya1 recapitulated most features of human del22q11 syndromes, including craniofacial, cardiac outflow tract, and aortic arch malformations. 21364285 2011
Entrez Id: 6299
Gene Symbol: SALL1
SALL1
0.350 Biomarker group BEFREE Human SALL1 is a homologue of the Drosophila region-specific homeotic gene sal, and is also known as a causative gene for Townes-Brocks syndrome, which is characterized by multi-organ malformations. 20053786 2010
Entrez Id: 6495
Gene Symbol: SIX1
SIX1
0.350 Biomarker group BEFREE These findings uncover an essential role for Six1 in establishing a functionally normal ureter and provide new insights into the molecular basis of urinary tract malformations in BOR patients. 20110314 2010
Entrez Id: 6299
Gene Symbol: SALL1
SALL1
0.350 Biomarker group CTD_human Sall1 is expressed in the metanephric mesenchyme in the developing kidney, and mice deficient in Sall1 show kidney agenesis or dysgenesis. 20127799 2010
Entrez Id: 2138
Gene Symbol: EYA1
EYA1
0.350 AlteredExpression group BEFREE Four eya1 mRNAs encoding proteins correlated with congenital anomalies in human were injected into early stage embryos. 19951260 2010